Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_34

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402 mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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80,616 - 8401 mRNA_33 0.65 0.9
80,626 + 8401 mRNA_33 0.65 0.8
80,666 - 8401 mRNA_33 0.67 1.1
80,977 + 8401 mRNA_33 0.81 1.0
81,101 + 8401 mRNA_33 0.87 3.5
81,113 + 8401 mRNA_33 0.88 1.2
81,114 - 8401 mRNA_33 0.88 0.3
81,221 - 0.6
81,232 - 0.8
81,251 - 1.0
81,260 - 1.3
81,275 - 0.8
81,278 + 0.5
81,407 - 0.5
82,155 + 8402 mRNA_34 0.22 -1.8
83,768 - 8402 mRNA_34 0.80 -0.9
84,344 + -0.1
84,348 + 0.3
84,391 - 0.3
84,470 + 1.1
84,625 - -0.3
84,639 - -0.0
84,669 - 0.4
84,751 - 1.7
84,771 + 0.3
84,804 - 0.0
84,918 + -0.9
84,943 + 1.4
84,947 - 0.3
85,016 - 0.4
85,016 - -0.4
85,167 - 8403 mRNA_35 0.18 2.1
85,238 + 8403 mRNA_35 0.25 -0.3