Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_16

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39313 to 41292 8383 mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41535 to 45882 8384

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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41,523 - -0.8
41,618 - 0.6
41,620 + 0.4
41,697 - 0.6
41,830 + 0.1
41,854 - 1.2
41,863 + 1.4
42,189 + 8384 mRNA_16 0.15 1.0
42,340 - 8384 mRNA_16 0.19 0.6
42,375 - 8384 mRNA_16 0.19 -1.4
42,431 + 8384 mRNA_16 0.21 -0.5
42,449 + 8384 mRNA_16 0.21 0.1
42,479 + 8384 mRNA_16 0.22 0.6
42,598 - 8384 mRNA_16 0.24 -0.4
42,602 - 8384 mRNA_16 0.25 -0.3
42,604 - 8384 mRNA_16 0.25 0.0
42,613 - 8384 mRNA_16 0.25 -0.7
42,660 + 8384 mRNA_16 0.26 -0.2
42,785 + 8384 mRNA_16 0.29 1.1
42,829 + 8384 mRNA_16 0.30 -1.5
42,912 + 8384 mRNA_16 0.32 0.3
42,916 - 8384 mRNA_16 0.32 -2.2
43,043 + 8384 mRNA_16 0.35 0.3
43,046 - 8384 mRNA_16 0.35 0.9
43,055 + 8384 mRNA_16 0.35 2.6
43,082 + 8384 mRNA_16 0.36 0.7
43,091 + 8384 mRNA_16 0.36 0.1
43,459 - 8384 mRNA_16 0.44 0.4
43,464 - 8384 mRNA_16 0.44 -2.4
43,776 - 8384 mRNA_16 0.52 -0.1
43,803 - 8384 mRNA_16 0.52 -0.8
43,804 + 8384 mRNA_16 0.52 1.0
43,804 - 8384 mRNA_16 0.52 -0.7
43,815 + 8384 mRNA_16 0.52 1.6
43,816 + 8384 mRNA_16 0.52 0.5
43,816 + 8384 mRNA_16 0.52 0.0
43,882 + 8384 mRNA_16 0.54 -0.8
43,929 + 8384 mRNA_16 0.55 -0.2
43,929 + 8384 mRNA_16 0.55 0.0
43,937 + 8384 mRNA_16 0.55 -0.4
43,954 - 8384 mRNA_16 0.56 -0.8
43,960 + 8384 mRNA_16 0.56 -0.6
43,962 + 8384 mRNA_16 0.56 -0.3
43,963 + 8384 mRNA_16 0.56 0.4
43,986 + 8384 mRNA_16 0.56 -2.0
44,066 - 8384 mRNA_16 0.58 -0.8
44,142 - 8384 mRNA_16 0.60 0.0
44,197 + 8384 mRNA_16 0.61 1.0
44,332 - 8384 mRNA_16 0.64 1.4
44,390 - 8384 mRNA_16 0.66 1.5
44,476 - 8384 mRNA_16 0.68 -0.2
44,522 + 8384 mRNA_16 0.69 -1.8
44,543 + 8384 mRNA_16 0.69 0.9
44,633 + 8384 mRNA_16 0.71 0.2
44,699 - 8384 mRNA_16 0.73 1.0
44,712 + 8384 mRNA_16 0.73 0.1
44,812 - 8384 mRNA_16 0.75 -0.2
44,826 - 8384 mRNA_16 0.76 0.1
44,979 + 8384 mRNA_16 0.79 -0.6
44,979 + 8384 mRNA_16 0.79 0.4
45,062 - 8384 mRNA_16 0.81 0.0
45,113 + 8384 mRNA_16 0.82 0.7
45,142 - 8384 mRNA_16 0.83 -0.2
45,678 + 0.2
45,713 + 0.9
45,813 + -0.3
45,822 - -1.4
45,833 - -0.3
45,845 - -0.3
45,967 - -1.6
45,981 + -0.5
45,990 - 0.7
45,992 + -0.1
45,994 - 0.0
45,995 + -1.2
45,999 + -0.1
46,003 + 0.4
46,023 + -0.1
46,027 + 3.3
46,040 + -2.0
46,040 + 0.0
46,054 - -0.0
46,101 - 2.1
46,213 - 0.9
46,221 - 0.2
46,254 + -0.7
46,266 + 0.4
46,352 + 0.2
46,354 + -0.2
46,357 + 0.1
46,384 + 0.7
46,416 + -1.1
46,425 - 0.4
46,482 - 0.7
46,527 - -0.7
46,645 - -0.2
46,812 - -0.1
46,851 + -1.5