Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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595 + -0.5
609 - 0.5
637 - 0.7
651 + -0.3
654 + 0.5
659 - 0.2
663 + 0.8
672 - -0.2
673 + -0.2
685 + 1.1
725 + -0.0
790 - 0.0
791 + -1.0
798 + 0.0
798 + 0.2
804 - -1.8
821 + 0.1
860 + -0.0
899 - -0.3
916 + -0.2
939 + -0.1
957 + -0.2
975 - 1.3
976 + 0.6
996 - -0.8
1,005 + 0.3
1,005 - 0.0
1,007 - -0.5
1,052 + 0.9
1,058 + 0.7
1,070 + -0.0
1,113 - -0.9
1,115 - 0.2
1,117 + -0.2
1,207 + 0.5
1,257 + -0.0
1,285 - -0.3
1,359 - 0.3
1,422 + 0.1
1,960 + 8369 mRNA_1 0.44 0.2
2,268 + 8369 mRNA_1 0.79 -1.6
2,361 - 8369 mRNA_1 0.89 -0.6
2,441 + 0.6
2,550 + 1.3
2,552 - -1.7
2,564 + 0.9
2,701 + -0.2
2,839 - 0.2
2,853 + 1.2
2,946 - -0.8
3,005 - 0.6
3,125 - -0.9
3,136 + -0.3