Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8449

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1257751 to 1258571 16816 mRNA_8449: 16817 - KOG0198 MEKK and related serine/threonine protein kinases, at 1258732 to 1261080 16817

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,257,732 + 1.0
1,257,740 - -1.1
1,257,742 + -0.7
1,257,774 + -0.1
1,257,802 - -0.4
1,257,829 - -1.1
1,257,854 + 16816 mRNA_8448 0.13 0.7
1,257,854 + 16816 mRNA_8448 0.13 -0.0
1,257,883 + 16816 mRNA_8448 0.16 0.0
1,257,915 + 16816 mRNA_8448 0.20 0.1
1,257,922 + 16816 mRNA_8448 0.21 -1.1
1,257,940 + 16816 mRNA_8448 0.23 0.0
1,258,009 - 16816 mRNA_8448 0.31 2.5
1,258,020 - 16816 mRNA_8448 0.33 -0.7
1,258,033 + 16816 mRNA_8448 0.34 0.0
1,258,135 + 16816 mRNA_8448 0.47 -0.1
1,258,167 + 16816 mRNA_8448 0.51 -0.6
1,258,290 - 16816 mRNA_8448 0.66 0.0
1,258,301 - 16816 mRNA_8448 0.67 -1.0
1,258,315 + 16816 mRNA_8448 0.69 1.2
1,258,318 + 16816 mRNA_8448 0.69 -0.6
1,258,328 + 16816 mRNA_8448 0.70 0.3
1,258,454 + 16816 mRNA_8448 0.86 1.1
1,258,456 - 16816 mRNA_8448 0.86 1.2
1,258,725 - 0.2
1,258,887 - 0.2
1,258,918 + 0.6
1,259,072 + 16817 mRNA_8449 0.14 0.3
1,259,111 - 16817 mRNA_8449 0.16 0.2
1,259,359 + 16817 mRNA_8449 0.27 -0.6
1,259,360 - 16817 mRNA_8449 0.27 -2.8
1,259,374 - 16817 mRNA_8449 0.27 -0.3
1,259,434 + 16817 mRNA_8449 0.30 0.7
1,259,551 - 16817 mRNA_8449 0.35 0.3
1,259,579 + 16817 mRNA_8449 0.36 0.4
1,259,636 + 16817 mRNA_8449 0.38 -1.7
1,259,645 + 16817 mRNA_8449 0.39 0.8
1,259,849 - 16817 mRNA_8449 0.48 -0.6
1,259,858 - 16817 mRNA_8449 0.48 0.2
1,259,958 + 16817 mRNA_8449 0.52 0.0
1,259,972 - 16817 mRNA_8449 0.53 0.2
1,260,099 - 16817 mRNA_8449 0.58 0.5
1,260,106 - 16817 mRNA_8449 0.58 0.9
1,260,116 + 16817 mRNA_8449 0.59 0.0
1,260,162 + 16817 mRNA_8449 0.61 0.7
1,260,217 + 16817 mRNA_8449 0.63 -0.7
1,260,220 - 16817 mRNA_8449 0.63 -1.3
1,260,290 + 16817 mRNA_8449 0.66 -0.0
1,260,361 + 16817 mRNA_8449 0.69 -0.7
1,260,567 + 16817 mRNA_8449 0.78 0.5
1,260,573 - 16817 mRNA_8449 0.78 0.1
1,260,584 + 16817 mRNA_8449 0.79 0.1
1,260,712 + 16817 mRNA_8449 0.84 -1.2
1,260,717 + 16817 mRNA_8449 0.85 -1.3
1,260,965 - -0.6
1,261,130 - 1.5
1,261,271 + 1.8
1,261,440 + 0.8
1,261,442 - -0.9
1,261,443 + -0.4
1,261,592 + 0.4
1,261,631 + -0.7
1,261,835 - 0.4
1,261,846 + 0.3
1,261,849 - -0.5