Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8237

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733012 to 733833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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733,232 - 16604 mRNA_8236 0.27 -0.6
733,239 - 16604 mRNA_8236 0.28 0.2
733,659 - 16604 mRNA_8236 0.79 -0.0
733,685 - 16604 mRNA_8236 0.82 0.2
733,692 - 16604 mRNA_8236 0.83 0.7
733,692 - 16604 mRNA_8236 0.83 -0.8
733,701 + 16604 mRNA_8236 0.84 0.1
733,725 - 16604 mRNA_8236 0.87 -1.2
733,835 + -0.4
733,837 + 0.4
734,250 + 0.1
734,251 - -1.1
734,272 + 0.9
734,426 + 1.3
734,459 + 16605 mRNA_8237 0.11 1.9
734,581 + 16605 mRNA_8237 0.17 0.7
734,656 - 16605 mRNA_8237 0.21 0.8
734,679 + 16605 mRNA_8237 0.22 0.3
734,986 + 16605 mRNA_8237 0.37 1.2
735,132 - 16605 mRNA_8237 0.44 -0.4
735,566 + 16605 mRNA_8237 0.66 0.9
735,704 + 16605 mRNA_8237 0.72 -0.1
735,822 + 16605 mRNA_8237 0.78 0.1
735,983 - 16605 mRNA_8237 0.86 -0.5
736,010 - 16605 mRNA_8237 0.87 0.3
736,011 + 16605 mRNA_8237 0.88 0.3
736,019 + 16605 mRNA_8237 0.88 1.8
736,025 + 16605 mRNA_8237 0.88 0.0
736,137 - 1.0
736,148 + -1.2
736,169 + 0.6
736,172 - 0.4
736,224 - 0.7
736,309 - -0.2
736,315 + -0.9
736,324 - 0.2
736,329 + 0.6
736,329 - -1.0
736,334 - -0.1
736,350 - -1.1
736,351 + -1.0
736,457 + -0.3
736,479 - 0.6
736,487 - 0.3
736,488 - 0.2
736,488 + -0.9
736,490 - 2.0
736,498 + -0.4
736,500 - -0.6
736,501 - 0.2
736,501 + 0.6
736,502 + 0.4
736,502 + 0.4
736,502 + -1.0
736,503 + -2.1
736,504 - -1.0
736,505 + 0.4
736,505 - 0.8
736,506 - -1.1
736,508 + -0.1
736,510 + 0.1
736,511 - 1.3
736,511 - -0.2
736,544 - -0.1
736,545 + -0.5
736,546 - -0.5
736,566 + -0.4
736,581 + -1.0
736,663 - 0.4
736,675 + -1.1
736,686 + -0.2
736,714 - -0.5
736,714 + -0.1
736,725 - -2.4
736,731 - -0.3
736,745 + -0.0
736,857 - 0.1
736,863 + 0.9
736,866 - -1.9
736,881 + 0.5
737,003 - 16606 mRNA_8238 0.12 0.5
737,004 - 16606 mRNA_8238 0.12 0.3
737,005 + 16606 mRNA_8238 0.13 -1.9
737,012 - 16606 mRNA_8238 0.13 -1.2
737,036 - 16606 mRNA_8238 0.15 0.1