Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7906

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7905: 16273 - K00147 proA glutamate-5-semialdehyde dehydrogenase, at 1344206 to 1345846 16273 mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1346644 to 1348770 16274 mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1348898 to 1356379 16275

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,345,846 + -1.6
1,345,851 + 0.4
1,345,851 - 2.0
1,345,864 - 0.8
1,345,882 + 0.4
1,345,887 - 0.3
1,345,907 - 0.0
1,345,923 + 0.3
1,345,982 - 0.0
1,345,984 - -0.1
1,345,995 - -0.4
1,346,003 + 1.6
1,346,019 + 1.0
1,346,022 + 0.2
1,346,089 - -0.6
1,346,146 + 0.5
1,346,162 + 0.0
1,346,188 + -0.2
1,346,266 - 0.9
1,346,281 - 1.0
1,346,282 - 0.6
1,346,301 + 0.6
1,346,302 + 0.3
1,346,323 - -0.3
1,346,335 + 0.1
1,346,360 - 0.0
1,346,379 - -0.5
1,346,400 + -0.2
1,346,410 + 0.5
1,346,460 - 1.0
1,346,596 + 0.5
1,346,597 - -0.5
1,346,601 + -1.1
1,346,608 + 0.5
1,346,612 - -0.7
1,346,762 + 0.3
1,346,775 + 1.0
1,346,865 - 16274 mRNA_7906 0.10 -0.8
1,346,914 + 16274 mRNA_7906 0.13 0.3
1,347,064 - 16274 mRNA_7906 0.20 0.8
1,347,324 + 16274 mRNA_7906 0.32 -1.0
1,347,327 - 16274 mRNA_7906 0.32 1.0
1,347,340 - 16274 mRNA_7906 0.33 0.7
1,347,399 + 16274 mRNA_7906 0.35 0.0
1,347,496 + 16274 mRNA_7906 0.40 0.6
1,347,568 - 16274 mRNA_7906 0.43 0.0
1,347,688 - 16274 mRNA_7906 0.49 0.7
1,347,819 - 16274 mRNA_7906 0.55 1.0
1,347,861 - 16274 mRNA_7906 0.57 1.3
1,347,923 - 16274 mRNA_7906 0.60 -0.1
1,347,929 - 16274 mRNA_7906 0.60 0.7
1,348,103 - 16274 mRNA_7906 0.69 -1.0
1,348,120 - 16274 mRNA_7906 0.69 0.3
1,348,121 - 16274 mRNA_7906 0.69 -1.1
1,348,224 + 16274 mRNA_7906 0.74 0.8
1,348,299 - 16274 mRNA_7906 0.78 -1.6
1,348,304 + 16274 mRNA_7906 0.78 1.3
1,348,433 + 16274 mRNA_7906 0.84 -0.0
1,348,706 - 0.9
1,348,720 + 0.6
1,348,760 - -0.8