Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7177

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1055308 to 1056885 15544 mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1057170 to 1058665 15545 mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1058838 to 1059935 15546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,056,377 + 15544 mRNA_7176 0.68 0.8
1,056,504 - 15544 mRNA_7176 0.76 0.5
1,056,692 + 15544 mRNA_7176 0.88 -1.5
1,056,707 - 15544 mRNA_7176 0.89 -0.2
1,056,942 - -0.2
1,056,977 - 0.5
1,057,067 - 1.2
1,057,081 + 0.8
1,057,112 - -1.1
1,057,119 + -0.8
1,057,119 - 0.3
1,057,120 + -0.1
1,057,120 - -0.6
1,057,120 - -0.8
1,057,120 - 0.3
1,057,120 - -0.9
1,057,120 - 0.5
1,057,121 + -0.1
1,057,121 + -2.6
1,057,122 + 0.3
1,057,122 + -0.7
1,057,123 + 0.8
1,057,126 - -0.1
1,057,126 + -0.9
1,057,141 + -0.5
1,057,144 - -2.4
1,057,149 + -0.7
1,057,153 + 0.3
1,057,282 + -0.4
1,057,298 - -1.1
1,057,298 - -0.1
1,057,468 - 15545 mRNA_7177 0.20 -0.5
1,057,561 + 15545 mRNA_7177 0.26 0.9
1,058,437 - 15545 mRNA_7177 0.85 0.9
1,058,440 - 15545 mRNA_7177 0.85 -0.1
1,058,459 + 15545 mRNA_7177 0.86 -0.1
1,059,006 + 15546 mRNA_7178 0.15 -0.3
1,059,006 + 15546 mRNA_7178 0.15 -0.4
1,059,008 - 15546 mRNA_7178 0.15 -0.6
1,059,597 - 15546 mRNA_7178 0.69 -1.6