Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7139

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7138: 15506 - K14655 RIB2, PUS8 tRNA pseudouridine synthase 8 / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase, at 968699 to 969330 15506 mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969483 to 971578 15507 mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971914 to 976417 15508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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968,602 - 0.3
968,623 - 0.5
968,650 + 0.4
968,654 - 1.1
969,353 - 0.7
969,376 - 0.6
969,501 - 0.1
969,508 - -1.2
969,520 + 0.3
969,621 + 0.3
969,964 + 15507 mRNA_7139 0.23 0.6
969,995 + 15507 mRNA_7139 0.24 0.4
970,005 - 15507 mRNA_7139 0.25 -0.1
970,239 + 15507 mRNA_7139 0.36 0.5
970,277 + 15507 mRNA_7139 0.38 0.7
970,675 - 15507 mRNA_7139 0.57 0.6
970,860 + 15507 mRNA_7139 0.66 0.6
971,029 - 15507 mRNA_7139 0.74 0.9
971,125 - 15507 mRNA_7139 0.78 -0.7
971,131 - 15507 mRNA_7139 0.79 -1.1
971,269 + 15507 mRNA_7139 0.85 0.2
971,288 - 15507 mRNA_7139 0.86 0.5
971,397 - 0.8
971,405 + 2.2
971,434 + 2.2
971,440 + 1.1
971,492 + 0.8
971,741 + 1.1
971,748 + 0.0
971,992 + -0.1
972,013 - -0.8
972,166 + 0.6
972,189 + 0.2
972,515 - 15508 mRNA_7140 0.13 0.2