Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7072

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814580 to 815327 15439 mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476 15440 mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819072 to 820252 15441

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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814,652 + -0.3
814,665 - 15439 mRNA_7071 0.11 0.6
814,807 - 15439 mRNA_7071 0.30 0.9
814,820 - 15439 mRNA_7071 0.32 0.3
815,260 - -2.3
815,415 + 0.8
815,576 + 0.3
816,522 - 15440 mRNA_7072 0.32 -0.1
816,536 - 15440 mRNA_7072 0.32 1.4
816,681 + 15440 mRNA_7072 0.37 0.2
816,980 + 15440 mRNA_7072 0.48 -0.1
817,124 + 15440 mRNA_7072 0.53 0.1
817,560 + 15440 mRNA_7072 0.68 0.9
818,025 + 15440 mRNA_7072 0.84 0.1
818,269 + -0.3
818,301 - -0.7
818,403 + -0.5
818,587 - 0.7
818,589 - -0.5
818,640 - -2.1
818,733 - 0.3
818,739 + 0.8
818,742 + -1.0
818,757 - 0.5
818,779 - -0.2
818,788 + -0.6
818,802 + -0.0
818,811 - -0.3
818,891 - 0.7
818,982 - -0.4
819,028 - -1.5
819,029 - 0.7
819,032 + -0.3
819,039 + 0.5
819,042 + -0.0
819,451 + 15441 mRNA_7073 0.32 -0.1