Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6801

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169 mRNA_6802: 15170 - Hypothetical Protein, at 170561 to 172312 15170

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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167,478 + -1.4
167,606 + 0.3
167,611 + -0.7
167,614 - 0.2
167,626 - -0.2
167,731 - -0.1
167,757 - -1.3
167,763 - -0.0
167,772 + -0.5
167,795 - -0.7
167,890 + 1.1
167,891 + 0.9
167,899 - -0.2
167,900 - -0.9
167,902 + -0.2
167,946 - 0.2
167,953 - -0.7
167,960 - -0.1
167,964 - -0.2
168,029 + 0.7
168,079 - -0.5
168,080 + -0.8
168,085 - -1.4
168,086 + 0.1
168,089 - 0.7
168,089 - 0.1
168,089 - 0.1
168,090 - -0.2
168,090 - 0.3
168,090 + 0.0
168,090 - -0.9
168,091 + -0.1
168,093 + -0.1
168,097 + -0.3
168,107 + -0.6
168,116 + -0.3
168,117 - -0.2
168,117 + 0.6
168,118 - -0.1
168,123 - 0.6
168,138 + 0.3
168,141 - 0.3
168,148 + -0.3
168,149 + 0.8
168,171 + 1.2
168,174 + -0.8
168,177 - -1.0
168,181 - 0.2
168,190 - 2.5
168,190 + 0.1
168,200 - 0.7
168,203 - -0.2
168,205 - 0.8
168,212 + 0.4
168,220 - -0.1
168,224 + 0.2
168,226 - -0.5
168,228 - -1.1
168,229 - 0.7
168,229 + -1.2
168,244 + -0.8
168,244 + 0.0
168,245 - 0.3
168,247 + -0.2
168,247 + 0.4
168,249 + -0.3
168,250 - 0.6
168,279 - 0.1
168,344 - 0.9
168,360 - 0.7
168,383 + -0.4
168,385 - 2.4
168,386 - 0.4
168,505 - -0.1
168,532 - -1.1
168,542 - 0.5
168,702 + 15169 mRNA_6801 0.13 -0.0
168,705 + 15169 mRNA_6801 0.13 0.2
168,833 + 15169 mRNA_6801 0.21 1.0
168,837 - 15169 mRNA_6801 0.21 -0.3
168,837 + 15169 mRNA_6801 0.21 2.1
169,101 - 15169 mRNA_6801 0.35 0.9
169,264 + 15169 mRNA_6801 0.44 0.7
169,418 + 15169 mRNA_6801 0.53 -1.0
169,661 + 15169 mRNA_6801 0.66 0.2
169,662 - 15169 mRNA_6801 0.66 1.2
169,965 - 15169 mRNA_6801 0.83 0.9
170,115 - -1.5
170,278 - 0.1
170,279 - -0.2
170,356 - -0.2
170,383 - 0.7
170,388 + -0.1
170,402 - 0.4
170,407 - 0.6
170,410 + -0.2
170,438 - 0.2
170,444 - 0.7
170,444 + -2.4
170,445 - -0.1
170,445 + -0.7
170,446 - -0.3
170,447 + -1.1
170,449 + 0.3
170,453 + 0.6
170,453 + -0.0
170,454 + 0.6
170,460 - -0.0
170,460 + -1.0
170,470 - 0.4
170,479 + -0.7
170,489 + -0.7
170,591 - -1.3
170,603 + -0.2
170,607 - 0.4
170,612 - 1.1
170,618 + -0.7
170,635 + 0.2
170,646 + -0.3
170,655 + 0.3
170,765 - 15170 mRNA_6802 0.12 0.8
170,778 - 15170 mRNA_6802 0.12 0.5
170,783 + 15170 mRNA_6802 0.13 0.6
170,806 - 15170 mRNA_6802 0.14 -0.4
170,810 + 15170 mRNA_6802 0.14 0.5
170,961 - 15170 mRNA_6802 0.23 -0.3
171,223 + 15170 mRNA_6802 0.38 0.6