Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6671

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6670: 15038 - K03676 grxC, GLRX, GLRX2 glutaredoxin 3, at 1408478 to 1409380 15038 mRNA_6671: 15039 - K08331 ATG13 autophagy-related protein 13, at 1410209 to 1413905 15039 mRNA_6672: 15040 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1414224 to 1415709 15040

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,409,295 - 0.7
1,409,307 + 0.3
1,409,440 - 0.6
1,409,452 + 0.2
1,409,460 - 0.7
1,409,578 - 0.9
1,409,619 - 0.7
1,409,730 - -0.7
1,409,738 + -1.1
1,409,745 - 1.6
1,409,863 + 0.6
1,409,871 + -1.6
1,409,871 + 0.6
1,409,873 - -0.3
1,409,876 - 0.4
1,409,890 - 0.5
1,409,895 + -0.5
1,409,902 - -1.0
1,409,909 + -0.3
1,410,056 - 1.1
1,410,182 - 0.3
1,410,184 - -0.0
1,410,187 + 0.5
1,410,208 - 0.1
1,410,213 - 0.1
1,410,220 + -0.5
1,410,295 - 0.7
1,410,314 - -0.6
1,411,514 - 15039 mRNA_6671 0.35 0.1
1,411,926 - 15039 mRNA_6671 0.46 -0.1
1,411,926 + 15039 mRNA_6671 0.46 -0.1
1,411,930 - 15039 mRNA_6671 0.47 -0.7
1,412,205 - 15039 mRNA_6671 0.54 2.0
1,412,364 + 15039 mRNA_6671 0.58 1.0
1,412,957 - 15039 mRNA_6671 0.74 -0.9
1,413,083 - 15039 mRNA_6671 0.78 -0.0
1,413,140 + 15039 mRNA_6671 0.79 -0.8
1,413,300 - 15039 mRNA_6671 0.84 -0.7
1,413,612 + 0.8
1,413,729 + 0.2
1,413,845 - 0.7
1,414,037 + -0.6
1,414,040 - 0.5