Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6628

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6627: 14995 - KOG1114 Tripeptidyl peptidase II, at 1280374 to 1283965 14995 mRNA_6628: 14996 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 1284165 to 1286987 14996 mRNA_6629: 14997 - KOG0538 Glycolate oxidase, at 1287348 to 1288864 14997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,283,415 + 14995 mRNA_6627 0.85 -0.4
1,283,447 - 14995 mRNA_6627 0.86 0.8
1,283,453 - 14995 mRNA_6627 0.86 0.1
1,283,786 - -0.5
1,284,085 - 0.3
1,284,124 + -1.5
1,284,143 - -0.1
1,284,516 + 14996 mRNA_6628 0.12 -1.0
1,284,521 - 14996 mRNA_6628 0.13 0.4
1,284,705 + 14996 mRNA_6628 0.19 0.2
1,284,799 - 14996 mRNA_6628 0.22 -0.7
1,284,802 + 14996 mRNA_6628 0.23 -0.2
1,284,828 + 14996 mRNA_6628 0.23 0.4
1,284,857 + 14996 mRNA_6628 0.25 0.3
1,284,975 - 14996 mRNA_6628 0.29 -0.1
1,284,981 + 14996 mRNA_6628 0.29 0.6
1,285,094 - 14996 mRNA_6628 0.33 -0.4
1,285,163 + 14996 mRNA_6628 0.35 0.5
1,285,252 + 14996 mRNA_6628 0.39 -2.1
1,285,270 + 14996 mRNA_6628 0.39 0.5
1,285,288 + 14996 mRNA_6628 0.40 0.9
1,285,431 - 14996 mRNA_6628 0.45 -0.2
1,285,578 + 14996 mRNA_6628 0.50 0.8
1,285,733 - 14996 mRNA_6628 0.56 0.4
1,285,835 - 14996 mRNA_6628 0.59 -0.5
1,285,838 + 14996 mRNA_6628 0.59 -2.5
1,285,866 + 14996 mRNA_6628 0.60 0.1
1,286,106 - 14996 mRNA_6628 0.69 -0.5
1,286,107 - 14996 mRNA_6628 0.69 0.1
1,286,246 - 14996 mRNA_6628 0.74 -0.1
1,286,247 + 14996 mRNA_6628 0.74 0.9
1,286,296 - 14996 mRNA_6628 0.75 -0.6
1,286,317 + 14996 mRNA_6628 0.76 0.2
1,286,422 - 14996 mRNA_6628 0.80 0.3
1,286,557 - 14996 mRNA_6628 0.85 0.8
1,286,564 + 14996 mRNA_6628 0.85 0.2
1,286,746 + -0.7
1,286,749 - 0.1
1,287,173 + 0.2
1,287,436 - -1.6
1,287,496 - -1.3
1,287,521 - 14997 mRNA_6629 0.11 -0.4
1,287,646 + 14997 mRNA_6629 0.20 0.8
1,287,906 + 14997 mRNA_6629 0.37 0.1