Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6531

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6530: 14898 - K03809 wrbA NAD(P)H dehydrogenase (quinone), at 1010809 to 1011597 14898 mRNA_6531: 14899 - K19940 SEC2 Rab guanine nucleotide exchange factor SEC2, at 1011977 to 1014833 14899 mRNA_6532: 14900 - K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12, at 1015408 to 1016084 14900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,011,044 + 14898 mRNA_6530 0.30 -0.6
1,011,180 - 14898 mRNA_6530 0.47 -0.3
1,011,331 + 14898 mRNA_6530 0.66 1.4
1,011,370 + 14898 mRNA_6530 0.71 -1.8
1,011,624 - -1.2
1,011,625 + -0.3
1,011,635 - -0.6
1,011,636 + 0.4
1,011,638 + 0.7
1,011,648 + 0.2
1,011,656 + 0.6
1,011,771 - -1.0
1,011,825 - 0.8
1,012,076 - 1.4
1,012,078 - -1.1
1,012,081 - -0.5
1,012,092 + -0.3
1,012,094 - 1.8
1,012,095 + 0.4
1,012,101 + -0.8
1,012,111 - 0.2
1,012,111 - -0.4
1,012,117 + 0.6
1,012,123 - 0.1
1,012,126 + 1.1
1,012,131 + -0.1
1,012,131 + -0.5
1,012,146 - 1.4
1,012,147 - 0.6
1,012,157 - 1.2
1,012,227 + -0.7
1,012,265 - 14899 mRNA_6531 0.10 0.6
1,012,268 + 14899 mRNA_6531 0.10 -0.6
1,012,406 - 14899 mRNA_6531 0.15 0.6
1,012,530 - 14899 mRNA_6531 0.19 0.6
1,012,534 - 14899 mRNA_6531 0.19 0.4
1,012,689 + 14899 mRNA_6531 0.25 -0.0
1,012,999 - 14899 mRNA_6531 0.36 -0.2
1,013,106 - 14899 mRNA_6531 0.40 0.3
1,013,139 - 14899 mRNA_6531 0.41 -2.1
1,013,157 + 14899 mRNA_6531 0.41 -0.1
1,013,263 - 14899 mRNA_6531 0.45 0.4
1,013,465 - 14899 mRNA_6531 0.52 -0.2
1,013,893 - 14899 mRNA_6531 0.67 -0.8
1,013,901 + 14899 mRNA_6531 0.67 0.3
1,014,194 + 14899 mRNA_6531 0.78 1.3
1,014,441 + 14899 mRNA_6531 0.86 -1.6
1,014,591 - -0.8
1,014,743 + 0.8
1,014,750 - 2.9
1,014,887 - 0.5
1,014,894 - -0.4
1,014,904 - 0.3
1,014,905 + -0.0
1,015,042 - -0.9
1,015,043 - 0.7
1,015,045 + -0.7
1,015,066 - 1.6
1,015,072 + 0.7
1,015,087 - 0.1
1,015,097 - 0.2
1,015,197 + 0.8
1,015,214 - 0.9
1,015,344 + 0.5
1,015,494 - 14900 mRNA_6532 0.13 -1.4
1,015,516 + 14900 mRNA_6532 0.16 -0.0
1,015,649 - 14900 mRNA_6532 0.36 -0.6
1,015,660 + 14900 mRNA_6532 0.37 1.3