Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6469

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858043 to 864348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864745 to 865870 14838

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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857,804 + -0.5
857,872 + 1.0
857,900 + -0.4
858,041 + 0.8
858,150 - 1.0
860,303 - 14837 mRNA_6469 0.36 0.2
861,323 - 14837 mRNA_6469 0.52 -0.3
861,728 + 14837 mRNA_6469 0.58 -0.6
862,446 + 14837 mRNA_6469 0.70 1.0
862,563 - 14837 mRNA_6469 0.72 -0.0
863,932 - -0.5
863,938 - -0.2
864,093 - -1.6
864,093 - -1.7
864,182 + 0.4
864,385 - 1.4
864,401 + 0.1
864,685 + -0.3
864,793 + 0.1
864,842 + -0.2
864,869 - 14838 mRNA_6470 0.11 0.7
864,977 + 14838 mRNA_6470 0.21 0.6
864,979 + 14838 mRNA_6470 0.21 -0.1
864,986 - 14838 mRNA_6470 0.21 -0.2
865,031 + 14838 mRNA_6470 0.25 -1.4
865,139 + 14838 mRNA_6470 0.35 -1.7
865,170 + 14838 mRNA_6470 0.38 -0.2
865,302 - 14838 mRNA_6470 0.49 0.1