Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6283

Experiments: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433495 to 438419 14650 mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438750 to 440581 14651 mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440723 to 442428 14652

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
438,347 + -0.5
438,446 + 0.8
438,600 - 0.5
438,758 + 0.7
438,882 + 0.1
439,463 - 14651 mRNA_6283 0.39 1.2
440,318 + 14651 mRNA_6283 0.86 0.6
440,324 + 14651 mRNA_6283 0.86 0.8
440,325 + 14651 mRNA_6283 0.86 0.1
440,331 + 14651 mRNA_6283 0.86 0.5
440,332 + 14651 mRNA_6283 0.86 -1.8
440,334 + 14651 mRNA_6283 0.86 0.2
440,335 - 14651 mRNA_6283 0.87 0.3
440,336 - 14651 mRNA_6283 0.87 0.3
440,628 - -0.7
440,629 - 0.5
440,630 + 1.5
440,633 - 0.5
440,641 - -0.2
440,646 + 0.6
440,796 - -0.4
441,382 - 14652 mRNA_6284 0.39 0.5
441,402 + 14652 mRNA_6284 0.40 0.1
441,517 - 14652 mRNA_6284 0.47 0.3