Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5862

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1110574 to 1111803 14230 mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1112014 to 1113676 14231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,109,618 - 1.1
1,109,640 - 0.6
1,109,850 - 0.6
1,109,924 + 2.3
1,110,058 - -0.3
1,110,192 + -0.3
1,110,777 + 14230 mRNA_5862 0.17 0.1
1,110,926 + 14230 mRNA_5862 0.29 0.4
1,111,090 + 14230 mRNA_5862 0.42 2.1
1,111,360 + 14230 mRNA_5862 0.64 -1.3
1,111,634 - 14230 mRNA_5862 0.86 0.3
1,112,077 + -1.4
1,112,234 + 14231 mRNA_5863 0.13 0.6
1,112,545 + 14231 mRNA_5863 0.32 -0.9