Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5828

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5827: 14195 - K04518 pheA2 prephenate dehydratase, at 1035308 to 1036218 14195 mRNA_5828: 14196 - KOG0725 Reductases with broad range of substrate specificities, at 1036637 to 1037941 14196 mRNA_5829: 14197 - K00228 CPOX, hemF coproporphyrinogen III oxidase, at 1038121 to 1039722 14197

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,035,756 + 14195 mRNA_5827 0.49 -3.4
1,035,780 + 14195 mRNA_5827 0.52 -4.7
1,035,895 + 14195 mRNA_5827 0.64 -1.8
1,036,186 + -1.3
1,036,287 - 0.2
1,036,300 - 1.2
1,036,310 - 1.3
1,036,326 - -0.2
1,036,333 - -1.4
1,036,463 - -0.0
1,036,605 - -0.0
1,036,622 + -0.7
1,036,644 - 0.2
1,036,645 + 1.6
1,036,645 + -0.4
1,036,778 + 14196 mRNA_5828 0.11 0.1
1,037,218 + 14196 mRNA_5828 0.45 -2.2
1,037,233 + 14196 mRNA_5828 0.46 1.2
1,037,617 + 14196 mRNA_5828 0.75 0.6
1,037,621 - 14196 mRNA_5828 0.75 -0.5
1,037,779 + 14196 mRNA_5828 0.88 0.7
1,037,779 - 14196 mRNA_5828 0.88 -0.6
1,037,830 + 0.5
1,037,889 + 0.2
1,037,909 - -0.2
1,037,910 + -0.3
1,037,927 + 0.0
1,037,947 - 0.5
1,037,948 + -0.5
1,038,086 - 0.2
1,038,096 - 0.4
1,038,109 - -0.2