Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5630

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547536 to 549644 13997 mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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549,048 - 13997 mRNA_5629 0.72 -1.0
549,065 + 13997 mRNA_5629 0.72 0.2
549,100 + 13997 mRNA_5629 0.74 -1.2
549,528 - 0.7
549,601 + 0.8
549,794 - -0.4
549,797 + 0.2
549,818 - -0.4
549,923 - 0.2
549,988 + 0.4
550,085 + 13998 mRNA_5630 0.11 0.3
550,092 + 13998 mRNA_5630 0.12 -0.1
550,273 + 13998 mRNA_5630 0.21 -0.9
550,624 - 13998 mRNA_5630 0.38 -1.1
550,639 + 13998 mRNA_5630 0.39 -0.7
550,677 - 13998 mRNA_5630 0.40 0.3
550,891 - 13998 mRNA_5630 0.51 0.9
550,904 + 13998 mRNA_5630 0.52 -1.1
550,979 - 13998 mRNA_5630 0.55 0.4
551,102 + 13998 mRNA_5630 0.61 -1.8
551,207 + 13998 mRNA_5630 0.66 0.7
551,479 + 13998 mRNA_5630 0.80 0.1
551,779 - -0.1
551,793 + 0.4
551,808 + 0.3
551,840 + 0.5
551,842 - 0.3
551,942 - 0.9
551,945 - 1.0
551,957 - 0.0
551,961 + 0.8
551,963 - 1.0
551,964 + 0.6
551,966 + 0.1
551,971 + -0.2
551,977 + 0.3
551,979 + 0.2
551,979 + -0.7
552,118 + -0.3
552,233 + 0.2
552,418 + 0.1