Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5568: 13936 - Hypothetical Protein, at 396764 to 397075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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396,619 - 0.5
396,781 + 0.3
396,782 + -0.5
396,927 - 13936 mRNA_5568 0.52 1.8
397,169 - 0.7
397,209 + -0.5
397,220 - -1.6
397,324 - 0.4
397,343 - 0.8
397,346 + -0.4
397,347 + -1.5
397,371 - 0.9
397,465 + 0.4
397,480 - 0.2
397,487 + -0.2
397,496 + 0.3
397,507 - 0.8
397,508 - 0.2
397,510 + 0.9
397,514 - 0.1
397,514 - -0.5
397,524 - -0.2
397,526 - -0.4
397,531 - 0.5
397,533 - 0.3
397,533 - 0.0
397,654 + -1.0
397,659 - 0.8
397,661 - -0.1
397,667 - -0.4
397,669 + 1.0
397,670 + -0.4
397,734 + 13937 mRNA_5569 0.11 -0.3
397,786 + 13937 mRNA_5569 0.14 -0.1
397,802 - 13937 mRNA_5569 0.16 1.1
397,813 + 13937 mRNA_5569 0.16 -1.3
397,814 - 13937 mRNA_5569 0.16 0.1
397,815 - 13937 mRNA_5569 0.16 0.6
397,815 - 13937 mRNA_5569 0.16 -0.5
397,837 - 13937 mRNA_5569 0.18 0.5
397,837 + 13937 mRNA_5569 0.18 -0.8
397,855 - 13937 mRNA_5569 0.19 -0.8
397,882 - 13937 mRNA_5569 0.21 -0.8
397,979 + 13937 mRNA_5569 0.28 -1.8
398,260 - 13937 mRNA_5569 0.48 -0.2
398,269 + 13937 mRNA_5569 0.48 -1.1
398,542 - 13937 mRNA_5569 0.67 0.7
398,705 - 13937 mRNA_5569 0.79 0.7
398,859 - 13937 mRNA_5569 0.89 1.1
398,872 - 0.5
398,925 + -0.1
399,269 - 1.3
399,278 - 0.3
399,294 + 1.0
399,294 + 1.2
399,338 + 0.1
399,421 - 0.4
399,425 - 1.0
399,432 - 0.6
399,437 - 0.4
399,446 + 1.3
399,457 - -0.6
399,464 - 0.7