Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5535

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5534: 13902 - K18798 AFG1, LACE1 peroxisome-assembly ATPase, at 315936 to 317983 13902 mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318348 to 322384 13903 mRNA_5536: 13904 - Hypothetical Protein, at 322636 to 323526 13904

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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317,541 + 13902 mRNA_5534 0.78 -1.8
317,550 - 13902 mRNA_5534 0.79 0.5
317,558 + 13902 mRNA_5534 0.79 0.6
317,562 + 13902 mRNA_5534 0.79 -0.1
317,699 + 13902 mRNA_5534 0.86 -0.1
317,722 - 13902 mRNA_5534 0.87 0.1
317,741 - 13902 mRNA_5534 0.88 -0.4
317,855 + -0.4
318,012 + 0.8
318,028 - 0.3
318,029 + 0.4
318,033 + 0.1
318,042 + -1.5
318,046 + -0.8
318,173 - -0.4
318,304 - -0.4
318,310 + 0.3
318,313 + 1.0
318,313 + 0.7
318,562 + 1.5
319,366 - 13903 mRNA_5535 0.25 1.6
319,640 + 13903 mRNA_5535 0.32 0.6
319,949 + 13903 mRNA_5535 0.40 0.5
320,227 - 13903 mRNA_5535 0.47 -0.5
320,398 - 13903 mRNA_5535 0.51 0.8
320,521 + 13903 mRNA_5535 0.54 0.3
320,658 - 13903 mRNA_5535 0.57 0.5
320,682 + 13903 mRNA_5535 0.58 0.5
320,983 - 13903 mRNA_5535 0.65 0.9
321,244 - 13903 mRNA_5535 0.72 -1.2
321,437 + 13903 mRNA_5535 0.77 1.4
321,550 - 13903 mRNA_5535 0.79 -0.3
321,660 + 13903 mRNA_5535 0.82 0.6
321,706 - 13903 mRNA_5535 0.83 -0.6
321,938 - 13903 mRNA_5535 0.89 -0.5
321,950 - 13903 mRNA_5535 0.89 -0.3
322,217 + 0.5
322,388 + -0.8
322,567 + -0.6
322,859 + 13904 mRNA_5536 0.25 -0.0
323,160 + 13904 mRNA_5536 0.59 -1.0
323,280 - 13904 mRNA_5536 0.72 -0.2