Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5279

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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344,625 - 1.7
345,398 + 13647 mRNA_5279 0.17 0.3
345,402 + 13647 mRNA_5279 0.17 0.9
345,512 + 13647 mRNA_5279 0.21 0.1
345,521 - 13647 mRNA_5279 0.21 -0.1
345,549 - 13647 mRNA_5279 0.22 -0.3
345,811 - 13647 mRNA_5279 0.32 1.6
346,032 + 13647 mRNA_5279 0.40 -0.2
346,412 - 13647 mRNA_5279 0.54 -0.6
346,675 - 13647 mRNA_5279 0.64 -1.1
346,834 - 13647 mRNA_5279 0.69 -2.2
347,049 + 13647 mRNA_5279 0.77 -1.4
347,059 + 13647 mRNA_5279 0.78 -0.0
347,136 - 13647 mRNA_5279 0.81 -0.5
347,187 + 13647 mRNA_5279 0.82 0.8
347,241 - 13647 mRNA_5279 0.84 1.0
347,274 - 13647 mRNA_5279 0.86 0.1
347,333 - 13647 mRNA_5279 0.88 0.5
347,470 - 0.6
347,729 - -1.2
347,796 + 1.7
347,882 + 1.0
347,904 + 0.2
348,210 - -0.4
348,212 - -0.2
348,312 - 0.2
348,347 + 0.4
348,360 + 1.3
348,384 - 0.7