Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5000

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4999: 13367 - Hypothetical Protein, at 1504901 to 1505364 13367 mRNA_5000: 13368 - K16302 CNNM metal transporter CNNM, at 1505561 to 1508084 13368 mRNA_5001: 13369 - K00649 GNPAT glyceronephosphate O-acyltransferase, at 1508431 to 1511895 13369

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,504,618 - 0.4
1,505,051 - 13367 mRNA_4999 0.32 1.3
1,505,075 + 13367 mRNA_4999 0.38 0.5
1,505,363 - -0.3
1,505,377 - 0.2
1,505,648 + -0.8
1,505,667 + -1.0
1,506,537 - 13368 mRNA_5000 0.39 -3.0
1,506,563 - 13368 mRNA_5000 0.40 -2.1
1,506,809 - 13368 mRNA_5000 0.49 -0.6
1,507,113 + 13368 mRNA_5000 0.61 -1.6
1,507,130 + 13368 mRNA_5000 0.62 -0.4
1,507,572 + 13368 mRNA_5000 0.80 -0.0
1,507,746 + 13368 mRNA_5000 0.87 1.4
1,508,135 + -0.3
1,508,274 + -0.9
1,508,299 + 1.0
1,508,305 + 0.4
1,508,307 + 0.0
1,508,312 + 0.5
1,508,596 + 0.5
1,509,020 + 13369 mRNA_5001 0.17 0.1