Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4960

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4959: 13327 - K08269 ULK1_2_3, ATG1 serine/threonine-protein kinase ULK/ATG1, at 1406421 to 1410214 13327 mRNA_4960: 13328 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 1410723 to 1413349 13328 mRNA_4961: 13329 - Hypothetical Protein, at 1413701 to 1414806 13329

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,409,756 + 13327 mRNA_4959 0.88 0.2
1,409,863 - 1.0
1,409,865 - -0.5
1,409,881 - 0.0
1,410,003 + 0.6
1,410,144 - -0.9
1,410,144 - -0.5
1,410,147 + 0.3
1,410,184 + -0.1
1,410,186 + -0.5
1,410,214 + -0.0
1,410,285 - -0.7
1,410,325 + -0.8
1,410,326 - -0.6
1,410,333 - -1.0
1,410,337 + 1.2
1,410,408 + -0.8
1,410,446 + -0.4
1,410,464 - -0.1
1,410,464 + -0.6
1,410,465 + -0.6
1,410,469 + 0.5
1,410,472 - 1.4
1,410,508 + 1.6
1,410,627 - 0.0
1,410,635 + 0.9
1,410,642 - 0.0
1,410,782 - -0.1
1,410,790 + 1.9
1,410,795 + 0.1
1,410,902 - -0.1
1,410,906 + 0.4
1,410,917 + -0.6
1,410,918 + -0.5
1,411,048 - 13328 mRNA_4960 0.12 1.4
1,411,278 - 13328 mRNA_4960 0.21 -0.0
1,411,351 - 13328 mRNA_4960 0.24 -0.8
1,411,499 - 13328 mRNA_4960 0.30 -0.3
1,411,669 - 13328 mRNA_4960 0.36 0.1
1,411,776 - 13328 mRNA_4960 0.40 0.3
1,411,959 - 13328 mRNA_4960 0.47 0.4
1,411,960 - 13328 mRNA_4960 0.47 0.3
1,411,964 - 13328 mRNA_4960 0.47 0.8
1,412,246 + 13328 mRNA_4960 0.58 0.2
1,412,413 - 13328 mRNA_4960 0.64 -0.7
1,412,433 + 13328 mRNA_4960 0.65 -0.5
1,412,970 + 13328 mRNA_4960 0.86 0.7
1,412,971 - 13328 mRNA_4960 0.86 2.5
1,413,032 - 13328 mRNA_4960 0.88 0.5
1,413,106 - 0.2
1,413,108 - 0.5
1,413,124 - 0.4
1,413,240 - -0.2
1,413,258 + 1.8
1,413,262 + 0.4
1,413,290 - -0.4
1,413,401 + -0.2
1,413,401 - 0.1
1,413,409 + 1.1
1,413,439 - -0.5