Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4849

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4848: 13216 - Hypothetical Protein, at 1137464 to 1141122 13216 mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1141315 to 1143566 13217 mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1143914 to 1146258 13218

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,140,357 - 13216 mRNA_4848 0.79 -0.2
1,140,542 + 13216 mRNA_4848 0.84 0.5
1,140,584 - 13216 mRNA_4848 0.85 -0.3
1,140,968 - -0.4
1,140,975 - 0.6
1,140,998 - -0.4
1,141,117 + 1.5
1,142,008 + 13217 mRNA_4849 0.31 0.5
1,142,681 + 13217 mRNA_4849 0.61 1.0
1,142,709 - 13217 mRNA_4849 0.62 -0.6
1,142,881 - 13217 mRNA_4849 0.70 -0.7
1,142,885 - 13217 mRNA_4849 0.70 0.2
1,142,970 - 13217 mRNA_4849 0.73 0.2
1,142,997 - 13217 mRNA_4849 0.75 0.5
1,143,308 - 13217 mRNA_4849 0.88 0.6
1,143,327 + 13217 mRNA_4849 0.89 -0.2
1,143,338 + 13217 mRNA_4849 0.90 1.6
1,143,576 - -1.4
1,143,588 + -0.2
1,143,609 + 1.2
1,143,611 + 0.8
1,143,620 + -0.0
1,143,621 + 0.2
1,143,621 - 0.7
1,143,622 - 0.7
1,143,624 - -0.4
1,143,625 + 0.6
1,143,625 - -0.5
1,143,631 + -0.4
1,143,632 + -1.5
1,143,634 - -0.7
1,143,638 + 0.0
1,143,645 + -0.5
1,143,646 + -0.3
1,143,681 - -0.2
1,143,686 - 0.9
1,143,718 + 0.8
1,143,748 + -0.9
1,143,750 - 0.2
1,143,866 + -2.0