Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4727

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866956 to 867873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868153 to 868831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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867,156 + 13094 mRNA_4726 0.22 -0.2
867,434 + 13094 mRNA_4726 0.52 0.3
867,445 - 13094 mRNA_4726 0.53 -0.3
867,448 + 13094 mRNA_4726 0.54 1.4
867,468 + 13094 mRNA_4726 0.56 1.5
867,554 - 13094 mRNA_4726 0.65 0.3
867,867 - 0.0
867,880 - -0.1
867,923 - 0.1
868,012 - -0.0
868,303 + 13095 mRNA_4727 0.22 -0.3
868,448 + 13095 mRNA_4727 0.43 -0.5
868,595 + 13095 mRNA_4727 0.65 -0.7
868,598 + 13095 mRNA_4727 0.66 0.7
868,608 - 13095 mRNA_4727 0.67 -0.3
868,615 - 13095 mRNA_4727 0.68 -0.7
868,719 - 13095 mRNA_4727 0.83 0.4
868,727 - 13095 mRNA_4727 0.85 -0.3
868,799 + -2.3
868,864 - -1.3
868,873 - -0.3
868,885 + 0.3
869,138 - 13096 mRNA_4728 0.14 -1.3
869,611 - 13096 mRNA_4728 0.41 -0.9
869,768 - 13096 mRNA_4728 0.50 0.2