Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4429

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4428: 12796 - Hypothetical Protein, at 161727 to 164031 12796 mRNA_4429: 12797 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 164549 to 166627 12797 mRNA_4430: 12798 - KOG0322 G-protein beta subunit-like protein GNB1L, contains WD repeats, at 167017 to 168895 12798

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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163,567 - 12796 mRNA_4428 0.80 0.6
163,705 - 12796 mRNA_4428 0.86 0.1
163,858 + 1.0
163,941 - 1.0
164,189 - -1.1
164,190 + 0.9
164,367 - 0.8
164,375 + -0.6
164,375 + -0.4
164,422 - 0.4
164,650 + -1.2
164,670 + -1.3
164,881 + 12797 mRNA_4429 0.16 0.2
164,962 - 12797 mRNA_4429 0.20 0.1
165,051 + 12797 mRNA_4429 0.24 1.4
165,359 - 12797 mRNA_4429 0.39 -0.9
165,474 + 12797 mRNA_4429 0.44 0.4
165,489 - 12797 mRNA_4429 0.45 2.8
165,557 + 12797 mRNA_4429 0.48 0.3
165,582 - 12797 mRNA_4429 0.50 -0.3
165,659 - 12797 mRNA_4429 0.53 1.1
165,698 + 12797 mRNA_4429 0.55 -1.1
165,699 + 12797 mRNA_4429 0.55 0.4
165,702 + 12797 mRNA_4429 0.55 0.9
165,741 + 12797 mRNA_4429 0.57 0.3
165,783 + 12797 mRNA_4429 0.59 -0.8
166,071 - 12797 mRNA_4429 0.73 0.9
166,081 + 12797 mRNA_4429 0.74 1.0
166,081 + 12797 mRNA_4429 0.74 -0.5
166,174 - 12797 mRNA_4429 0.78 -0.3
166,217 - 12797 mRNA_4429 0.80 -0.3
166,223 - 12797 mRNA_4429 0.81 0.4
166,225 - 12797 mRNA_4429 0.81 0.2
166,382 + 12797 mRNA_4429 0.88 -0.3
166,494 + 0.7
166,526 + 0.3
166,527 + 0.3
166,595 + -0.2
166,646 - 0.7
166,693 - 0.3
166,779 - 0.7
166,787 - 0.5
166,790 - -0.1
166,807 - 0.4
166,817 + 0.4
166,966 - -0.9