Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4260

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1729172 to 1731284 12627 mRNA_4260: 12628 - K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28, at 1731914 to 1736985 12628 mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1737818 to 1738734 12629

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,731,340 + 0.4
1,731,346 + -0.0
1,731,347 + 0.0
1,731,348 + 0.1
1,731,361 - -0.8
1,731,508 - 0.9
1,731,522 - 0.4
1,731,535 + 1.0
1,731,662 + 0.1
1,731,664 - -1.5
1,731,671 - 0.1
1,731,677 - 0.6
1,731,680 + 0.3
1,731,681 + -1.3
1,731,682 + 0.4
1,731,682 - -0.3
1,731,684 - 0.4
1,731,684 + -0.1
1,731,685 + 0.3
1,731,686 + 0.1
1,731,692 - -0.2
1,731,696 + -0.2
1,731,697 + 0.5
1,731,699 + 1.1
1,731,701 - 0.6
1,731,732 - 0.6
1,731,732 + 1.1
1,731,811 - 0.2
1,731,829 + -0.9
1,731,879 - -1.6
1,731,894 - 0.0
1,732,141 - 0.5
1,732,572 - 12628 mRNA_4260 0.13 -0.9
1,732,621 + 12628 mRNA_4260 0.14 0.3
1,732,755 + 12628 mRNA_4260 0.17 1.2
1,733,335 + 12628 mRNA_4260 0.28 1.8
1,733,456 + 12628 mRNA_4260 0.30 0.4
1,733,680 + 12628 mRNA_4260 0.35 0.8
1,733,748 - 12628 mRNA_4260 0.36 0.1
1,733,873 - 12628 mRNA_4260 0.39 0.3
1,734,019 + 12628 mRNA_4260 0.42 -0.1
1,734,301 - 12628 mRNA_4260 0.47 0.3
1,734,648 + 12628 mRNA_4260 0.54 -1.6
1,734,671 - 12628 mRNA_4260 0.54 0.8
1,734,925 - 12628 mRNA_4260 0.59 0.6
1,734,927 + 12628 mRNA_4260 0.59 -0.1
1,735,366 - 12628 mRNA_4260 0.68 -0.6
1,735,548 - 12628 mRNA_4260 0.72 -0.3
1,735,697 - 12628 mRNA_4260 0.75 -0.1
1,735,732 + 12628 mRNA_4260 0.75 0.7
1,735,783 - 12628 mRNA_4260 0.76 -0.1
1,735,979 - 12628 mRNA_4260 0.80 0.8
1,736,160 + 12628 mRNA_4260 0.84 0.6
1,736,278 + 12628 mRNA_4260 0.86 -0.9
1,736,295 - 12628 mRNA_4260 0.86 -1.3
1,736,601 - 0.4
1,736,779 + 0.1
1,736,788 - -0.1
1,737,047 + -0.5
1,737,194 - 0.8
1,737,205 + 1.1
1,737,214 + -0.4
1,737,345 - 0.6
1,737,381 - 0.4
1,737,456 - 0.8
1,737,500 - 0.2
1,737,503 + -1.7
1,737,519 + 0.3
1,737,688 - 1.0