Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4258

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4257: 12625 - K00295 MTD1 methylenetetrahydrofolate dehydrogenase (NAD+), at 1725575 to 1726851 12625 mRNA_4258: 12626 - KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily), at 1727283 to 1728545 12626 mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1729172 to 1731284 12627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,726,324 - 12625 mRNA_4257 0.59 0.2
1,726,328 + 12625 mRNA_4257 0.59 1.0
1,726,358 - 12625 mRNA_4257 0.61 -0.8
1,726,643 - 12625 mRNA_4257 0.84 1.3
1,726,661 + 12625 mRNA_4257 0.85 0.6
1,726,781 - 0.6
1,727,068 - -0.1
1,727,072 + -1.2
1,727,199 - -2.4
1,727,206 + 1.8
1,727,209 - 0.2
1,727,211 - 0.4
1,727,214 + 1.5
1,727,215 - 0.5
1,727,218 - 0.3
1,727,227 + -0.0
1,727,231 + 2.4
1,727,232 + 0.8
1,727,238 + -1.8
1,727,312 - -0.0
1,727,322 - 1.1
1,727,323 + 0.8
1,727,327 + -1.2
1,727,337 + 0.5
1,727,337 - -0.6
1,727,347 + -0.9
1,727,360 - -2.4
1,727,519 + 12626 mRNA_4258 0.19 0.7
1,727,757 - 12626 mRNA_4258 0.38 0.5
1,727,803 + 12626 mRNA_4258 0.41 0.5
1,728,088 - 12626 mRNA_4258 0.64 -0.6
1,728,184 - 12626 mRNA_4258 0.71 -0.5
1,728,201 + 12626 mRNA_4258 0.73 1.2