Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4199

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4198: 12566 - K00166 BCKDHA, bkdA1 2-oxoisovalerate dehydrogenase E1 component alpha subunit, at 1590487 to 1592266 12566 mRNA_4199: 12567 - KOG1303 Amino acid transporters, at 1592651 to 1594788 12567 mRNA_4200: 12568 - Hypothetical Protein, at 1595290 to 1595787 12568

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,591,736 - 12566 mRNA_4198 0.70 0.1
1,591,983 + 12566 mRNA_4198 0.84 -0.4
1,592,016 + 12566 mRNA_4198 0.86 -1.4
1,592,150 - -0.3
1,592,157 - -0.5
1,592,207 + 0.3
1,592,319 + -0.3
1,592,386 - 0.5
1,592,398 + 0.2
1,592,514 - 0.9
1,592,526 + 0.9
1,592,528 + 0.6
1,592,850 - -0.4
1,593,064 + 12567 mRNA_4199 0.19 -0.5
1,593,207 - 12567 mRNA_4199 0.26 -0.6
1,593,766 - 12567 mRNA_4199 0.52 -0.2
1,593,846 + 12567 mRNA_4199 0.56 -0.1
1,594,082 + 12567 mRNA_4199 0.67 0.1
1,594,203 + 12567 mRNA_4199 0.73 1.4
1,594,415 - 12567 mRNA_4199 0.83 1.2
1,594,500 - 12567 mRNA_4199 0.86 -0.6
1,594,520 + 12567 mRNA_4199 0.87 -0.5
1,594,525 - 12567 mRNA_4199 0.88 -0.8
1,594,541 + 12567 mRNA_4199 0.88 0.1
1,594,553 + 12567 mRNA_4199 0.89 -0.2
1,594,565 + 12567 mRNA_4199 0.90 -0.7
1,594,577 - -1.1
1,594,681 - 0.2
1,594,702 + -0.0
1,594,705 - 1.0
1,594,726 + 0.7
1,594,738 - 0.8
1,594,747 - 0.3
1,594,836 - 0.6
1,594,851 - 1.0
1,594,853 + -0.5
1,594,853 - 0.2
1,594,855 - -0.5
1,594,867 + 0.2
1,594,870 + -0.8
1,594,873 - -0.3
1,594,878 - -0.0
1,594,890 + -0.6
1,594,895 - 0.6
1,594,901 + 0.7
1,594,901 - 0.5
1,594,906 + -0.0
1,594,912 + 0.5
1,594,922 + -0.4
1,594,926 + -0.3
1,594,944 + 0.2
1,594,962 + -0.1
1,595,056 + 0.2
1,595,081 - 0.1
1,595,149 + 1.1
1,595,170 + -0.7
1,595,176 - -0.2
1,595,179 + -0.7
1,595,189 + 0.1
1,595,194 + 0.3
1,595,199 + -0.7
1,595,206 - 0.5
1,595,208 - 0.5
1,595,212 - 1.0
1,595,215 - 0.9
1,595,215 + -0.0
1,595,249 - 0.5
1,595,261 - 2.6
1,595,276 + 0.1
1,595,276 - -0.0
1,595,277 + 0.3
1,595,286 - -0.0
1,595,288 - -0.5
1,595,318 - -0.9
1,595,363 - 12568 mRNA_4200 0.15 -0.4
1,595,395 + 12568 mRNA_4200 0.21 -1.6
1,595,396 + 12568 mRNA_4200 0.21 0.1
1,595,402 + 12568 mRNA_4200 0.22 1.6
1,595,419 + 12568 mRNA_4200 0.26 0.6
1,595,443 + 12568 mRNA_4200 0.31 1.0
1,595,455 + 12568 mRNA_4200 0.33 0.3
1,595,458 + 12568 mRNA_4200 0.34 0.4
1,595,498 - 12568 mRNA_4200 0.42 0.2
1,595,583 + 12568 mRNA_4200 0.59 0.6