Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4193

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1579448 to 1580118 12560 mRNA_4193: 12561 - Hypothetical Protein, at 1580428 to 1584449 12561 mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1584696 to 1585623 12562

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,579,502 - 0.8
1,579,543 + 12560 mRNA_4192 0.14 0.4
1,579,681 - 12560 mRNA_4192 0.35 -0.2
1,580,278 + 0.7
1,580,387 + -0.2
1,580,393 - -0.5
1,580,395 - -1.4
1,580,396 + 0.7
1,580,748 + 0.6
1,580,870 + 12561 mRNA_4193 0.11 -0.2
1,580,871 + 12561 mRNA_4193 0.11 -1.0
1,581,262 - 12561 mRNA_4193 0.21 1.0
1,581,501 - 12561 mRNA_4193 0.27 -0.0
1,582,051 + 12561 mRNA_4193 0.40 0.0
1,582,181 + 12561 mRNA_4193 0.44 -0.5
1,582,540 - 12561 mRNA_4193 0.53 0.3
1,582,770 - 12561 mRNA_4193 0.58 -0.8
1,582,775 + 12561 mRNA_4193 0.58 0.1
1,582,931 - 12561 mRNA_4193 0.62 -1.2
1,583,043 + 12561 mRNA_4193 0.65 0.8
1,583,080 + 12561 mRNA_4193 0.66 -0.2
1,583,386 + 12561 mRNA_4193 0.74 -0.6
1,583,523 + 12561 mRNA_4193 0.77 -2.0
1,583,524 + 12561 mRNA_4193 0.77 -0.0
1,584,080 - -0.7
1,584,231 + 0.2
1,584,499 - -0.9
1,584,516 + 0.2
1,584,635 + 0.6
1,584,643 + -0.3
1,584,654 - -0.3
1,584,665 + -0.9
1,584,681 + -0.4
1,584,682 - -0.1
1,584,683 + -0.9
1,584,812 - 12562 mRNA_4194 0.12 0.9
1,584,817 - 12562 mRNA_4194 0.13 -1.9
1,584,929 - 12562 mRNA_4194 0.25 0.2
1,585,105 + 12562 mRNA_4194 0.44 -0.4
1,585,253 - 12562 mRNA_4194 0.60 -0.6