Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4093

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4092: 12460 - KOG0941 E3 ubiquitin protein ligase, at 1337124 to 1338710 12460 mRNA_4093: 12461 - Hypothetical Protein, at 1338946 to 1342318 12461 mRNA_4094: 12462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1343294 to 1345409 12462

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,338,515 + 12460 mRNA_4092 0.88 -0.7
1,338,653 - 0.0
1,338,788 + 0.0
1,339,497 + 12461 mRNA_4093 0.16 -0.4
1,339,770 - 12461 mRNA_4093 0.24 -0.8
1,339,783 + 12461 mRNA_4093 0.25 0.2
1,339,814 - 12461 mRNA_4093 0.26 0.1
1,340,063 - 12461 mRNA_4093 0.33 0.3
1,340,522 - 12461 mRNA_4093 0.47 0.3
1,340,557 - 12461 mRNA_4093 0.48 -0.9
1,340,844 + 12461 mRNA_4093 0.56 0.7
1,341,147 + 12461 mRNA_4093 0.65 -0.6
1,341,153 + 12461 mRNA_4093 0.65 1.1
1,341,271 + 12461 mRNA_4093 0.69 0.8
1,341,278 - 12461 mRNA_4093 0.69 0.7
1,341,285 + 12461 mRNA_4093 0.69 0.7
1,341,441 + 12461 mRNA_4093 0.74 2.4
1,341,472 + 12461 mRNA_4093 0.75 -1.2
1,341,604 + 12461 mRNA_4093 0.79 0.9
1,341,620 + 12461 mRNA_4093 0.79 1.2
1,341,780 - 12461 mRNA_4093 0.84 0.6
1,341,901 - 12461 mRNA_4093 0.88 0.7
1,341,902 + 12461 mRNA_4093 0.88 -0.3
1,342,035 - 1.0
1,342,040 + -0.0
1,342,060 - 0.4
1,342,077 - -1.2
1,342,080 - 1.3
1,342,092 + -0.6
1,342,170 - -0.3
1,342,198 + -0.2
1,342,204 + -0.1
1,342,216 + -0.5
1,342,223 - 0.1
1,342,248 - 0.1
1,342,268 - 0.0
1,342,272 + 0.2
1,342,361 - 0.1
1,342,368 - -0.8
1,342,374 - -0.7
1,342,375 - -0.9
1,342,381 - 0.1
1,342,381 - -0.2
1,342,383 - 0.8
1,342,384 - -2.5
1,342,385 + -0.2
1,342,389 + -0.4
1,342,390 + 0.6
1,342,403 - -0.5
1,342,403 + -0.8
1,342,409 + 0.5
1,342,409 - 0.7
1,342,411 + -0.3
1,342,412 - -0.6
1,342,413 - -0.2
1,342,417 - 0.1
1,342,418 + -1.6
1,342,418 + -0.6
1,342,422 - -0.9
1,342,424 - -0.2
1,342,424 + 1.5
1,342,431 + 0.3
1,342,441 + 0.1
1,342,442 - -0.1
1,342,444 - 2.0
1,342,454 - 1.1
1,342,459 + 0.3
1,342,461 - 0.7
1,342,474 + -0.1
1,342,586 + 1.2
1,342,592 - 1.0
1,342,593 + 0.6
1,342,596 + 0.6
1,342,623 - 0.2
1,342,628 - 0.9
1,342,653 + 0.2
1,342,656 - 0.1
1,342,658 + -0.7
1,342,789 - 0.3
1,342,803 + 0.4
1,342,817 - 0.3
1,342,933 - 1.4
1,342,947 - -0.4
1,342,953 - 0.2
1,342,964 - -0.8
1,342,972 - 0.2
1,342,976 - -0.2
1,342,976 - -0.9
1,342,977 + 0.3
1,342,983 - 1.4
1,342,989 + -0.5
1,343,001 + -0.8
1,343,008 - -1.0
1,343,013 - -0.7
1,343,015 + -1.0
1,343,016 + 1.4
1,343,026 + -0.7
1,343,026 - 0.4
1,343,031 + 0.7
1,343,046 + -0.2
1,343,168 + 0.3
1,343,281 - -0.3
1,343,291 + -0.7
1,343,298 + -1.0