Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3928

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921437 to 922417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922643 to 925532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925744 to 929341 12297

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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922,450 - 1.4
922,468 - 0.4
922,517 + 0.7
922,519 - -0.0
922,522 - 0.0
922,523 - -0.2
922,523 - 0.1
922,542 - -0.7
922,542 + 0.6
922,543 + -0.5
922,562 - 0.7
922,564 + 0.8
922,564 + 1.6
922,564 + 0.2
922,565 - 0.1
922,568 + 0.3
922,569 - 0.5
922,569 - -0.3
922,572 + 0.8
922,573 + 0.3
922,575 + 0.1
922,577 - -0.8
922,579 - 0.4
922,581 + 0.3
922,587 + -0.0
922,587 - 0.0
922,591 + -1.5
922,598 + 1.0
922,607 + 0.9
922,746 - -0.0
922,859 - -0.1
922,905 + 0.8
923,042 - 12296 mRNA_3928 0.14 0.6
923,181 - 12296 mRNA_3928 0.19 -0.3
923,183 + 12296 mRNA_3928 0.19 -0.1
923,463 - 12296 mRNA_3928 0.28 0.3
924,349 - 12296 mRNA_3928 0.59 -0.4
924,963 + 12296 mRNA_3928 0.80 0.1
925,369 + 0.2
925,375 - -0.7
925,439 - -0.4
925,488 + 0.5
925,753 - 0.4
925,762 - -0.9
925,770 + 0.7
925,786 - 0.7
925,794 - 0.5
925,796 - 0.7
925,813 - -0.5
925,815 + 1.1
925,824 + -0.6
925,833 + 0.6
925,835 - 0.9
925,838 + -0.2
925,839 - 0.2
925,840 - -0.8
925,841 + -0.2
925,976 - 1.4
926,107 - 12297 mRNA_3929 0.10 -1.0
926,131 - 12297 mRNA_3929 0.11 1.0
926,161 + 12297 mRNA_3929 0.12 -0.7
926,322 + 12297 mRNA_3929 0.16 0.3