Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3751

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497780 to 498794 12118 mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499022 to 503388 12119 mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503579 to 505478 12120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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498,806 - 1.0
498,938 + 1.7
499,386 - -1.0
499,387 - -0.6
499,520 - 12119 mRNA_3751 0.11 0.7
499,636 + 12119 mRNA_3751 0.14 -1.9
499,671 - 12119 mRNA_3751 0.15 -0.5
499,687 - 12119 mRNA_3751 0.15 -0.3
499,826 + 12119 mRNA_3751 0.18 0.5
499,846 - 12119 mRNA_3751 0.19 1.5
499,948 + 12119 mRNA_3751 0.21 -0.1
500,768 + 12119 mRNA_3751 0.40 -0.2
500,976 - 12119 mRNA_3751 0.45 -0.2
501,156 + 12119 mRNA_3751 0.49 0.4
501,357 - 12119 mRNA_3751 0.53 0.1
501,357 - 12119 mRNA_3751 0.53 -0.1
501,364 + 12119 mRNA_3751 0.54 -0.1
501,367 - 12119 mRNA_3751 0.54 2.0
501,408 - 12119 mRNA_3751 0.55 -0.5
501,422 - 12119 mRNA_3751 0.55 0.5
501,531 - 12119 mRNA_3751 0.57 1.0
501,721 + 12119 mRNA_3751 0.62 0.2
501,729 - 12119 mRNA_3751 0.62 0.0
501,891 - 12119 mRNA_3751 0.66 2.7
502,161 - 12119 mRNA_3751 0.72 0.4
502,279 - 12119 mRNA_3751 0.75 -0.4
502,300 + 12119 mRNA_3751 0.75 -2.8
502,321 + 12119 mRNA_3751 0.76 0.8
502,450 + 12119 mRNA_3751 0.78 1.6
502,715 - 12119 mRNA_3751 0.85 2.0
502,752 + 12119 mRNA_3751 0.85 1.5
503,338 + -0.1
503,447 - 0.3
503,453 - -0.1
503,466 - 0.3
503,478 - -0.5
503,496 + 2.0
503,505 + 0.2
503,510 + 0.5
503,517 - 0.2
503,520 + 0.7
503,520 + 1.3
503,522 + 1.7
503,523 + 0.5
503,529 + 0.1
503,622 + -1.0
503,624 - 0.6
503,647 - 0.8
503,698 + 0.7
503,806 + 12120 mRNA_3752 0.12 0.5
503,813 - 12120 mRNA_3752 0.12 0.5
504,079 - 12120 mRNA_3752 0.26 0.9
504,108 + 12120 mRNA_3752 0.28 0.5