Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2290

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536074 to 538335 10657 mRNA_2290: 10658 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 538803 to 539885 10658

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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537,930 + 10657 mRNA_2289 0.82 -0.2
537,964 - 10657 mRNA_2289 0.84 0.2
538,086 - 10657 mRNA_2289 0.89 -0.2
538,322 + -0.3
538,355 - -0.1
538,368 - 0.1
538,386 - 0.3
538,437 - -0.3
538,452 - 0.6
538,469 - -1.2
538,475 - -1.5
538,480 - 0.6
538,612 + -0.8
538,619 + -1.5
538,976 - 10658 mRNA_2290 0.16 0.4
539,126 - 10658 mRNA_2290 0.30 -0.1
539,439 - 10658 mRNA_2290 0.59 0.2
539,577 + 10658 mRNA_2290 0.71 0.0
539,583 + 10658 mRNA_2290 0.72 0.7
539,756 + 10658 mRNA_2290 0.88 -0.1
539,899 - 0.5
540,336 - -0.0
540,624 + -0.6
540,630 + 0.3
540,657 + 0.5
540,764 - -2.5
540,791 - 0.1
540,812 + 0.1
540,820 + 0.0
540,829 + -0.7