Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1943

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311 mRNA_1944: 10312 - BLAST Respiratory supercomplex factor 2, mitochondrial [Cla..., at 572594 to 573767 10312

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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570,203 - 10310 mRNA_1942 0.80 0.3
570,702 - 0.3
570,794 - 0.6
570,929 - -0.5
571,211 + 0.9
571,258 + 10311 mRNA_1943 0.11 -0.8
571,348 - 10311 mRNA_1943 0.20 -0.3
571,417 - 10311 mRNA_1943 0.26 -1.6
571,420 - 10311 mRNA_1943 0.26 -0.6
571,492 - 10311 mRNA_1943 0.33 -0.6
571,496 - 10311 mRNA_1943 0.34 -0.1
571,499 + 10311 mRNA_1943 0.34 0.4
571,638 + 10311 mRNA_1943 0.47 -1.7
571,785 - 10311 mRNA_1943 0.61 0.7
571,854 - 10311 mRNA_1943 0.67 0.4
571,924 + 10311 mRNA_1943 0.74 -0.7
571,930 - 10311 mRNA_1943 0.74 0.8
571,979 - 10311 mRNA_1943 0.79 0.5
572,061 - 10311 mRNA_1943 0.87 0.2
572,098 - 0.3
572,114 + 0.1
572,230 - 0.5
572,257 + -0.4
572,384 - -2.1
572,397 + 1.9
572,400 + 0.3
572,511 - -0.6
572,541 - -0.0
572,560 + -0.5
572,685 - 0.7
572,940 - 10312 mRNA_1944 0.29 0.5
572,974 - 10312 mRNA_1944 0.32 0.7
573,040 + 10312 mRNA_1944 0.38 -0.3
573,063 + 10312 mRNA_1944 0.40 -0.9
573,132 - 10312 mRNA_1944 0.46 2.5