Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1926

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523662 to 525143 10293 mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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524,589 + 10293 mRNA_1925 0.63 -0.6
524,806 + 10293 mRNA_1925 0.77 0.3
524,885 - 10293 mRNA_1925 0.83 -0.8
525,056 - -0.8
525,189 - -0.6
525,191 + -0.2
525,205 + -0.6
525,209 - 0.5
525,217 - 0.2
525,218 - 1.4
525,219 - 0.4
525,222 - 0.4
525,227 + -0.7
525,230 - -2.2
525,232 + -0.2
525,245 - -0.7
525,245 + 0.5
525,256 + 0.6
525,260 + 0.6
525,266 + 1.2
525,267 + 1.1
525,272 + 0.7
525,272 - 0.2
525,280 - -0.1
525,297 + 1.2
525,298 - -0.8
525,322 + -0.0
525,414 + -1.2
525,871 - 10294 mRNA_1926 0.21 0.2
526,345 - 10294 mRNA_1926 0.40 0.1
526,544 - 10294 mRNA_1926 0.48 -0.4
526,551 + 10294 mRNA_1926 0.48 -0.2
526,743 + 10294 mRNA_1926 0.56 0.0
527,414 + 10294 mRNA_1926 0.83 0.5
527,439 + 10294 mRNA_1926 0.84 0.6
527,441 - 10294 mRNA_1926 0.84 -0.3
527,463 + 10294 mRNA_1926 0.85 0.0
527,611 - -0.7
527,732 + 0.1
527,735 - -0.0
527,742 + 0.5
527,838 - 1.5
527,851 - 0.1
527,865 - 1.5
527,869 - -0.6
527,889 - -0.8
527,894 + 1.3
527,942 - 0.0
527,945 - -0.4
528,044 - -0.7
528,070 - 0.1
528,086 + -1.4
528,349 - -0.9
528,500 + 0.9
528,597 + -0.0
528,642 - -2.2