Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1862

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1861: 10229 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 393442 to 393978 10229 mRNA_1862: 10230 - Interpro DNA replication factor Cdt1 C-terminal domain 0, at 394402 to 396759 10230 mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396893 to 397973 10231

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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394,285 + 0.5
394,285 + 0.4
394,300 - -1.0
394,305 + 0.2
394,413 - -0.9
394,590 + -0.1
394,745 + 10230 mRNA_1862 0.15 0.1
395,328 + 10230 mRNA_1862 0.39 -1.9
395,460 + 10230 mRNA_1862 0.45 -1.2
395,464 - 10230 mRNA_1862 0.45 -1.7
395,600 + 10230 mRNA_1862 0.51 -0.5
396,060 + 10230 mRNA_1862 0.70 -1.2
396,357 + 10230 mRNA_1862 0.83 -0.1
396,484 - 10230 mRNA_1862 0.88 0.5
396,486 - 10230 mRNA_1862 0.88 0.4
396,884 + -2.6
397,065 - 10231 mRNA_1863 0.16 0.5
397,065 - 10231 mRNA_1863 0.16 0.1
397,333 + 10231 mRNA_1863 0.41 -0.0
397,370 - 10231 mRNA_1863 0.44 -0.4
397,669 + 10231 mRNA_1863 0.72 -0.7