Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1580

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1579: 9947 - Hypothetical Protein, at 648385 to 649747 9947 mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650033 to 651263 9948 mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651787 to 652843 9949

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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649,191 - 9947 mRNA_1579 0.59 -0.4
649,338 - 9947 mRNA_1579 0.70 -0.4
649,357 - 9947 mRNA_1579 0.71 -2.7
649,506 + 9947 mRNA_1579 0.82 -2.2
649,511 - 9947 mRNA_1579 0.83 -0.3
649,638 - -0.5
649,646 + -0.5
649,658 - -0.8
649,768 - 0.4
649,778 + 0.1
649,805 - -1.1
649,810 - -0.2
649,810 - 0.7
649,932 + -1.0
649,960 - -0.7
649,966 - -0.3
649,967 + 0.5
649,968 - 0.4
649,969 + -1.0
649,972 - 0.8
649,975 - -1.0
650,000 + -0.7
650,010 + -0.3
650,273 - 9948 mRNA_1580 0.19 1.6
650,298 - 9948 mRNA_1580 0.22 1.0
650,303 + 9948 mRNA_1580 0.22 0.7
650,423 + 9948 mRNA_1580 0.32 -0.4
650,574 - 9948 mRNA_1580 0.44 0.7
650,584 - 9948 mRNA_1580 0.45 0.1
650,683 + 9948 mRNA_1580 0.53 0.1
650,865 + 9948 mRNA_1580 0.68 0.3
651,318 - -0.7
651,450 - 0.4
651,564 - -0.7
651,597 + -0.6
651,609 - -1.6
651,609 + -1.7
651,629 - -1.2
651,638 - -1.7
651,640 + -1.2
651,645 - -2.5
651,648 - -0.0
651,653 + -2.2
651,659 + -0.9
651,671 - -1.3
651,677 + -0.2
651,678 - -0.1
651,680 + -1.8
651,844 - -0.0
651,851 + -0.8
651,960 + 9949 mRNA_1581 0.16 -0.7
651,969 + 9949 mRNA_1581 0.17 -1.3
652,144 - 9949 mRNA_1581 0.34 -0.9