Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1489

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1488: 9856 - K15371 GDH2 glutamate dehydrogenase, at 423330 to 427670 9856 mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429512 to 431122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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427,263 + -0.6
427,264 - -1.4
427,264 + -0.4
427,282 + -0.1
427,291 + -1.1
427,426 + -0.2
427,438 + -0.9
427,438 - -0.8
427,455 - -0.1
427,468 + -1.8
427,518 + -0.4
427,544 - -1.4
427,575 + -1.1
427,576 - -1.9
427,580 + -2.1
427,598 + -1.2
427,703 - -1.3
427,719 - 2.1
427,725 - 1.5
427,730 - 0.1
427,730 - -0.9
427,746 - 0.6
427,766 - 2.2
427,766 + 0.0
427,773 + -1.2
427,774 + -0.7
427,907 - -0.5
427,948 + -1.0
427,949 + 0.7
427,952 + -0.5
427,991 + 0.3
428,272 + -3.0
428,361 - 9857 mRNA_1489 0.14 0.6
428,405 + 9857 mRNA_1489 0.19 0.2
428,499 + 9857 mRNA_1489 0.30 0.3
428,793 + 9857 mRNA_1489 0.64 -0.1
428,802 + 9857 mRNA_1489 0.66 -0.6
429,226 + -0.2
429,364 - 0.5
429,381 + 0.4
429,389 - -1.2
429,389 + 0.7
429,393 - 1.0
429,413 + -2.5
429,513 - -2.9
429,567 - -0.6
429,809 + 9858 mRNA_1490 0.18 0.3
429,962 - 9858 mRNA_1490 0.28 -0.7
429,995 - 9858 mRNA_1490 0.30 -2.0