Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1389

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1389: 9757 - Hypothetical Protein, at 155335 to 156152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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154,755 - 0.5
154,788 + 0.2
154,918 - 0.2
155,056 + -0.6
155,060 + -2.9
155,069 - 1.0
155,091 - -1.2
155,127 + 0.1
155,216 + -0.7
155,226 + -0.8
155,231 - 0.8
155,239 + -0.5
155,249 + 1.1
155,349 + -0.7
155,354 - 2.4
155,365 - 1.0
155,366 - 0.5
155,380 + -1.1
155,389 + 0.6
155,391 - 0.9
155,392 - -0.5
155,394 - -1.5
155,404 + -0.7
155,502 + 9757 mRNA_1389 0.20 0.4
155,503 - 9757 mRNA_1389 0.21 2.3
155,527 - 9757 mRNA_1389 0.23 0.6
155,533 - 9757 mRNA_1389 0.24 0.4
155,544 - 9757 mRNA_1389 0.26 0.2
155,576 + 9757 mRNA_1389 0.29 -1.1
155,663 + 9757 mRNA_1389 0.40 0.4
155,667 - 9757 mRNA_1389 0.41 1.1
155,678 + 9757 mRNA_1389 0.42 -0.3
155,679 - 9757 mRNA_1389 0.42 -0.8
155,685 + 9757 mRNA_1389 0.43 -1.2
155,687 - 9757 mRNA_1389 0.43 0.0
155,690 - 9757 mRNA_1389 0.43 0.0
155,696 - 9757 mRNA_1389 0.44 0.6
155,715 - 9757 mRNA_1389 0.46 0.6
155,749 + 9757 mRNA_1389 0.51 0.5
155,764 + 9757 mRNA_1389 0.52 -0.1
155,816 + 9757 mRNA_1389 0.59 0.6
155,834 - 9757 mRNA_1389 0.61 -0.0
155,853 + 9757 mRNA_1389 0.63 -0.3
155,859 - 9757 mRNA_1389 0.64 0.1
155,861 - 9757 mRNA_1389 0.64 0.2
155,861 + 9757 mRNA_1389 0.64 -0.9
155,861 - 9757 mRNA_1389 0.64 0.4
155,861 + 9757 mRNA_1389 0.64 0.4
155,866 - 9757 mRNA_1389 0.65 1.9
155,872 + 9757 mRNA_1389 0.66 0.7
155,876 + 9757 mRNA_1389 0.66 1.4
155,878 + 9757 mRNA_1389 0.66 -3.4
155,887 + 9757 mRNA_1389 0.67 -1.1
155,998 - 9757 mRNA_1389 0.81 -1.3
156,021 + 9757 mRNA_1389 0.84 -1.0
156,156 + -0.3
156,157 - -1.1
156,173 + -0.1
156,723 - 1.4
156,876 - -0.7
156,887 + 0.1
156,905 + 9758 mRNA_1390 0.10 -0.1