Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_743

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1774415 to 1775869 9110 mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1776255 to 1777416 9111 mRNA_744: 9112 - KOG2533 Permease of the major facilitator superfamily, at 1777917 to 1780253 9112

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,775,365 + 9110 mRNA_742 0.65 0.9
1,775,502 + 9110 mRNA_742 0.75 0.7
1,775,891 - 0.4
1,775,895 - -0.7
1,775,915 + 2.9
1,776,053 + -1.2
1,776,055 - -2.0
1,776,063 + 0.0
1,776,063 - -0.3
1,776,395 + 9111 mRNA_743 0.12 -0.8
1,776,745 - 9111 mRNA_743 0.42 0.6
1,776,850 + 9111 mRNA_743 0.51 3.0
1,777,089 - 9111 mRNA_743 0.72 1.2
1,777,454 + -0.2
1,777,529 - 0.4
1,777,560 + 0.1
1,777,791 - -1.1
1,777,793 + -0.2
1,777,802 + 1.0
1,777,811 + 0.5
1,777,812 + -0.5
1,777,814 - -0.3
1,777,816 + 1.1
1,777,821 - 0.3
1,777,821 - 0.0
1,777,821 - 1.1
1,777,828 + -0.7
1,777,832 + 0.1
1,777,841 + -1.5
1,777,865 - 0.2
1,777,890 + -0.3
1,777,970 + 1.1
1,777,981 + 0.5
1,778,001 - 0.0
1,778,043 - 1.5
1,778,197 - 9112 mRNA_744 0.12 0.4
1,778,321 - 9112 mRNA_744 0.17 -0.2