Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_731

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1738976 to 1743135 9098 mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1743450 to 1746549 9099 mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1746932 to 1748724 9100

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,742,536 + 9098 mRNA_730 0.86 0.8
1,742,947 + 0.1
1,742,985 - 0.7
1,743,087 + 0.1
1,743,101 + -1.0
1,743,137 + 0.8
1,743,221 - 0.7
1,743,229 - 0.3
1,743,239 + -1.5
1,743,241 + 1.0
1,743,250 - 0.6
1,743,259 + -0.1
1,743,259 + 0.6
1,743,261 - 1.9
1,743,558 - 0.6
1,743,697 + 0.9
1,743,699 - -0.1
1,744,126 - 9099 mRNA_731 0.22 -0.6
1,744,285 - 9099 mRNA_731 0.27 1.0
1,744,427 - 9099 mRNA_731 0.32 -1.3
1,744,457 - 9099 mRNA_731 0.32 -1.7
1,744,661 + 9099 mRNA_731 0.39 0.4
1,744,940 - 9099 mRNA_731 0.48 1.0
1,745,174 - 9099 mRNA_731 0.56 0.5
1,745,416 - 9099 mRNA_731 0.63 0.1
1,745,609 - 9099 mRNA_731 0.70 0.8
1,745,889 - 9099 mRNA_731 0.79 0.3
1,745,898 + 9099 mRNA_731 0.79 -0.4
1,746,009 + 9099 mRNA_731 0.83 -0.6
1,746,291 + 1.1
1,746,301 - 0.5
1,746,311 - -0.3
1,746,396 - 1.0
1,746,397 + -0.1
1,746,431 - 0.2
1,746,439 + -1.0
1,746,464 - 0.4
1,746,573 - -2.1
1,746,582 - 0.2
1,746,600 - 0.1
1,746,601 - 1.1
1,746,605 - -0.0
1,746,610 + 0.0
1,746,737 + -0.1
1,746,748 - -0.4
1,746,756 + 0.8
1,746,874 - 1.1
1,746,876 - -0.3
1,746,940 + -0.5
1,746,945 - -2.7
1,746,992 - 2.3
1,747,005 + -0.1
1,747,051 + 0.0
1,747,421 + 9100 mRNA_732 0.27 -0.7