Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_588

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1401874 to 1405590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1406393 to 1408614 8956

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,405,584 - -0.9
1,405,596 - 0.4
1,406,318 + 0.1
1,406,337 + -0.1
1,406,459 - -0.1
1,406,477 - 1.4
1,406,487 + -1.5
1,406,619 - 8956 mRNA_588 0.10 -0.0
1,406,621 - 8956 mRNA_588 0.10 -0.5
1,406,625 + 8956 mRNA_588 0.10 -2.3
1,406,759 - 8956 mRNA_588 0.16 -0.7
1,406,771 - 8956 mRNA_588 0.17 -1.0
1,406,776 + 8956 mRNA_588 0.17 -0.5
1,406,779 - 8956 mRNA_588 0.17 -0.1
1,406,780 - 8956 mRNA_588 0.17 -0.7
1,407,055 - 8956 mRNA_588 0.30 0.8
1,407,778 - 8956 mRNA_588 0.62 1.4
1,407,939 + 8956 mRNA_588 0.70 -0.1
1,408,062 + 8956 mRNA_588 0.75 -0.1
1,408,830 + -0.3
1,409,243 - -0.9
1,409,393 + 0.3