Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_567

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1353645 to 1355726 8933 mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1355844 to 1356185 8934 mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1356456 to 1359397 8935 mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1359627 to 1361515 8936

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,355,919 + 8934 mRNA_566 0.22 -0.7
1,355,925 + 8934 mRNA_566 0.24 -0.2
1,356,185 + -1.2
1,356,200 + -0.1
1,356,306 + 0.2
1,356,308 - -0.3
1,356,313 - 0.5
1,356,325 - 0.2
1,356,325 - -0.7
1,356,331 + -0.1
1,356,332 + -0.5
1,356,634 - 0.3
1,356,659 - -0.7
1,356,783 + 8935 mRNA_567 0.11 0.2
1,356,807 + 8935 mRNA_567 0.12 0.7
1,357,301 - 8935 mRNA_567 0.29 0.2
1,357,310 - 8935 mRNA_567 0.29 -0.2
1,357,685 - 8935 mRNA_567 0.42 0.7
1,357,699 - 8935 mRNA_567 0.42 -0.5
1,357,824 - 8935 mRNA_567 0.46 0.2
1,357,983 + 8935 mRNA_567 0.52 1.0
1,358,024 + 8935 mRNA_567 0.53 -1.5
1,358,025 - 8935 mRNA_567 0.53 -0.1
1,358,248 - 8935 mRNA_567 0.61 -0.5
1,358,270 - 8935 mRNA_567 0.62 -0.6
1,358,275 - 8935 mRNA_567 0.62 -0.4
1,358,283 - 8935 mRNA_567 0.62 -0.2
1,358,291 + 8935 mRNA_567 0.62 -0.2
1,358,294 + 8935 mRNA_567 0.62 0.2
1,358,295 - 8935 mRNA_567 0.63 -0.3
1,358,307 + 8935 mRNA_567 0.63 -0.6
1,358,313 - 8935 mRNA_567 0.63 0.4
1,358,329 + 8935 mRNA_567 0.64 0.2
1,358,421 - 8935 mRNA_567 0.67 -0.6
1,358,428 + 8935 mRNA_567 0.67 -0.7
1,358,546 - 8935 mRNA_567 0.71 0.2
1,358,572 + 8935 mRNA_567 0.72 -1.2
1,358,609 - 8935 mRNA_567 0.73 -0.1
1,358,611 - 8935 mRNA_567 0.73 -0.7
1,358,612 - 8935 mRNA_567 0.73 0.1
1,358,626 + 8935 mRNA_567 0.74 0.1
1,358,712 + 8935 mRNA_567 0.77 -0.0
1,358,740 - 8935 mRNA_567 0.78 -0.1
1,358,740 + 8935 mRNA_567 0.78 0.1
1,359,289 + 0.6
1,359,489 + 1.0
1,359,685 + -0.4
1,360,066 + 8936 mRNA_568 0.23 -0.2
1,360,369 - 8936 mRNA_568 0.39 -0.3