Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_512

Experiments: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_511: 8879 - KOG1426 FOG RCC1 domain, at 1216193 to 1218102 8879 mRNA_512: 8880 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF13410,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 1218210 to 1219403 8880

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
1,217,441 - 8879 mRNA_511 0.65 0.9
1,217,527 + 8879 mRNA_511 0.70 -0.3
1,218,048 + -2.1
1,218,438 - 8880 mRNA_512 0.19 -0.4
1,218,981 - 8880 mRNA_512 0.65 -0.6
1,219,119 - 8880 mRNA_512 0.76 1.5
1,219,152 - 8880 mRNA_512 0.79 -0.1
1,219,170 - 8880 mRNA_512 0.80 0.7
1,219,171 + 8880 mRNA_512 0.80 0.5
1,219,205 + 8880 mRNA_512 0.83 -0.3
1,219,351 - 0.4
1,219,447 - -0.8
1,219,476 - 1.1
1,219,494 + 0.2
1,219,499 - 0.0
1,219,499 - 0.0
1,219,501 + 0.4
1,219,512 - 0.3
1,219,514 + 0.3
1,219,527 - -0.3
1,219,535 + 0.1
1,219,549 + -1.6
1,219,550 - 0.9
1,219,552 - 0.4
1,219,553 + 1.0
1,219,555 + -1.5
1,219,556 + -0.7
1,219,559 - -0.9
1,219,560 + 0.4
1,219,561 + -0.2
1,219,564 - 0.0
1,219,580 + -0.4
1,219,583 + 0.4
1,219,587 + 0.2
1,219,603 + -0.2
1,219,675 + -2.0
1,219,836 + -0.7
1,220,054 + -1.6
1,220,093 - 0.0
1,220,140 + -0.6
1,220,230 + -1.1
1,220,277 + -1.1