Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_246

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597112 to 598781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598851 to 601414 8614 mRNA_247: 8615 - K11254 H4 histone H4, at 602212 to 602729 8615

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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598,124 + 8613 mRNA_245 0.61 0.3
598,145 + 8613 mRNA_245 0.62 1.4
598,299 + 8613 mRNA_245 0.71 0.0
598,386 - 8613 mRNA_245 0.76 -0.1
598,939 - -0.4
598,969 - 0.1
598,971 + -1.8
598,974 - 0.5
598,987 - -0.8
598,988 - -0.1
599,002 + -0.9
599,034 + 0.6
599,094 + 0.4
599,130 - 8614 mRNA_246 0.11 -0.1
599,148 + 8614 mRNA_246 0.12 0.1
599,153 - 8614 mRNA_246 0.12 0.0
599,153 - 8614 mRNA_246 0.12 -1.1
599,153 - 8614 mRNA_246 0.12 -1.5
599,154 + 8614 mRNA_246 0.12 0.6
599,154 + 8614 mRNA_246 0.12 -2.3
599,166 + 8614 mRNA_246 0.12 -1.4
599,167 - 8614 mRNA_246 0.12 0.1
599,167 - 8614 mRNA_246 0.12 -0.0
599,172 + 8614 mRNA_246 0.13 0.7
599,173 + 8614 mRNA_246 0.13 0.4
599,176 - 8614 mRNA_246 0.13 0.6
599,177 + 8614 mRNA_246 0.13 -0.4
599,177 + 8614 mRNA_246 0.13 -0.9
599,178 - 8614 mRNA_246 0.13 -0.0
599,183 - 8614 mRNA_246 0.13 -1.5
599,185 - 8614 mRNA_246 0.13 1.0
599,187 + 8614 mRNA_246 0.13 -0.0
599,187 - 8614 mRNA_246 0.13 1.3
599,190 + 8614 mRNA_246 0.13 1.0
599,195 - 8614 mRNA_246 0.13 1.4
599,201 + 8614 mRNA_246 0.14 -0.6
599,201 + 8614 mRNA_246 0.14 -0.3
599,201 + 8614 mRNA_246 0.14 -0.5
599,201 + 8614 mRNA_246 0.14 0.2
599,201 + 8614 mRNA_246 0.14 1.1
599,201 - 8614 mRNA_246 0.14 -1.8
599,202 + 8614 mRNA_246 0.14 0.5
599,207 - 8614 mRNA_246 0.14 1.5
599,211 + 8614 mRNA_246 0.14 0.0
599,213 + 8614 mRNA_246 0.14 0.4
599,218 + 8614 mRNA_246 0.14 -1.7
599,223 + 8614 mRNA_246 0.15 0.3
599,228 - 8614 mRNA_246 0.15 0.9
599,254 + 8614 mRNA_246 0.16 -0.3
599,324 - 8614 mRNA_246 0.18 0.6
599,330 + 8614 mRNA_246 0.19 -0.6
599,333 + 8614 mRNA_246 0.19 0.0
599,551 + 8614 mRNA_246 0.27 -1.0
599,554 - 8614 mRNA_246 0.27 -0.4
599,617 - 8614 mRNA_246 0.30 1.0
599,668 + 8614 mRNA_246 0.32 0.1
599,731 + 8614 mRNA_246 0.34 -0.8
599,734 + 8614 mRNA_246 0.34 0.5
599,744 + 8614 mRNA_246 0.35 -0.1
599,747 - 8614 mRNA_246 0.35 -0.6
599,904 + 8614 mRNA_246 0.41 0.4
600,211 + 8614 mRNA_246 0.53 -1.8
600,781 + 8614 mRNA_246 0.75 -0.1
601,092 + 8614 mRNA_246 0.87 -2.4
601,207 + 0.2
601,218 + 0.3
601,337 - -0.3
601,350 + 0.5
601,479 + -2.1
601,497 + -0.9
601,501 + -0.8
601,506 + 0.2
601,506 + 0.4
601,506 + -0.9
601,509 + 1.4
601,513 - -0.7
601,515 + -0.0
601,653 + 0.4
601,779 - -0.2
601,843 - -0.3
601,844 - -0.1
601,845 + 1.0
601,851 - -0.5
601,852 - -0.2
601,852 + 1.4
601,853 + 1.3
601,853 + 0.1
601,860 + 0.9
601,895 - 0.7
601,903 - -0.1
602,006 + -0.5
602,007 + 0.8
602,062 - -0.4
602,164 + -0.8
602,178 + -2.0