Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_20

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388 mRNA_21: 8389 - SUPERFAMILY--SSF51045, at 59520 to 60624 8389

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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54,110 + 8387 mRNA_19 0.77 0.8
54,165 - 8387 mRNA_19 0.79 0.4
54,210 + 8387 mRNA_19 0.81 -1.6
54,466 + 0.2
54,566 + -1.7
54,569 - -1.1
54,595 - 0.9
54,602 - 0.8
54,605 + 0.5
54,629 + -0.1
54,751 - 0.4
54,754 - -0.4
54,754 - -1.4
54,758 - -0.9
54,760 + 0.4
54,761 + 0.3
54,765 - 0.1
54,767 + -1.6
54,768 - -0.6
54,776 - 0.1
54,777 + 0.1
54,777 + -0.6
54,782 + -0.3
54,787 + 0.5
54,913 - -0.9
54,917 - 1.4
54,947 + -1.4
54,947 + -0.2
54,952 - -0.2
55,100 + -0.4
55,379 - -0.2
55,383 + 0.2
55,808 - 8388 mRNA_20 0.18 -1.2
55,866 - 8388 mRNA_20 0.20 0.3
55,957 - 8388 mRNA_20 0.22 0.7
56,274 + 8388 mRNA_20 0.29 -0.4
56,282 + 8388 mRNA_20 0.29 -0.5
56,464 - 8388 mRNA_20 0.34 0.3
56,564 - 8388 mRNA_20 0.36 -0.1
56,571 + 8388 mRNA_20 0.36 -0.6
56,879 + 8388 mRNA_20 0.43 0.3
56,879 + 8388 mRNA_20 0.43 -0.4
57,308 + 8388 mRNA_20 0.53 0.5
57,526 - 8388 mRNA_20 0.58 -0.2
57,580 + 8388 mRNA_20 0.60 -0.1
57,592 + 8388 mRNA_20 0.60 -1.8
57,745 + 8388 mRNA_20 0.64 0.0
57,868 - 8388 mRNA_20 0.66 0.5
58,112 + 8388 mRNA_20 0.72 -1.3
58,621 + 8388 mRNA_20 0.84 0.1
58,761 + 8388 mRNA_20 0.87 -1.2
58,774 + 8388 mRNA_20 0.88 -0.6
58,781 - 8388 mRNA_20 0.88 -0.9
58,897 + -0.7
59,466 + -0.2
59,533 - 0.4
59,766 - 8389 mRNA_21 0.22 1.0
60,085 + 8389 mRNA_21 0.51 -0.3