Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8394

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1108603 to 1114039 16761 mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1114553 to 1119513 16762 mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1119619 to 1120614 16763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,113,786 - 0.7
1,113,786 - 0.2
1,113,786 - 0.7
1,113,787 - 1.9
1,113,791 + 0.0
1,113,942 - -0.4
1,114,060 - 1.7
1,114,108 - -0.7
1,114,245 + 0.3
1,114,259 - -0.5
1,114,272 - 0.7
1,114,533 + -0.1
1,114,697 + -1.2
1,114,699 + 0.7
1,114,701 + 0.7
1,114,703 - 2.5
1,114,996 + 1.1
1,115,217 + 16762 mRNA_8394 0.13 1.8
1,115,668 + 16762 mRNA_8394 0.22 2.1
1,117,384 + 16762 mRNA_8394 0.57 0.9
1,117,404 - 16762 mRNA_8394 0.57 1.4
1,117,712 + 16762 mRNA_8394 0.64 0.9
1,117,741 + 16762 mRNA_8394 0.64 1.4
1,117,979 - 16762 mRNA_8394 0.69 1.5
1,118,304 + 16762 mRNA_8394 0.76 1.5
1,118,351 + 16762 mRNA_8394 0.77 1.4
1,118,643 + 16762 mRNA_8394 0.82 0.4
1,118,710 - 16762 mRNA_8394 0.84 1.4
1,118,714 + 16762 mRNA_8394 0.84 -0.1
1,118,726 + 16762 mRNA_8394 0.84 -0.8
1,118,882 - 16762 mRNA_8394 0.87 1.5
1,119,037 + -0.1
1,119,132 + -0.9
1,119,133 + -0.5
1,119,148 + 1.3
1,119,305 - 0.4
1,119,305 - 0.8
1,119,314 + 1.3
1,119,389 - 0.2
1,119,511 + -0.1
1,119,565 + 1.0
1,119,596 + 0.1
1,119,753 + 16763 mRNA_8395 0.13 2.4
1,119,926 + 16763 mRNA_8395 0.31 0.4
1,120,219 - 16763 mRNA_8395 0.60 1.7
1,120,351 + 16763 mRNA_8395 0.73 1.1
1,120,453 - 16763 mRNA_8395 0.84 0.5