Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8239

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607 mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740976 to 744696 16608

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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737,317 + 16606 mRNA_8238 0.42 0.1
737,472 + 16606 mRNA_8238 0.57 -0.2
737,573 - 16606 mRNA_8238 0.67 0.4
737,618 + 16606 mRNA_8238 0.71 -0.7
737,725 - 16606 mRNA_8238 0.81 -0.2
737,832 - -0.7
737,838 + 0.3
737,849 - -1.7
737,854 + 0.3
737,857 - -0.4
737,868 + -1.9
737,900 + 0.5
737,902 - -0.2
737,957 + -0.0
737,975 - -1.6
737,976 - -0.3
737,979 + -0.1
737,987 + -0.4
737,989 - 0.1
737,994 - 0.9
738,011 + 0.5
738,016 + -0.1
738,027 - -0.4
738,045 + 0.0
738,048 - -0.4
738,050 - -0.1
738,054 + -0.4
738,072 - 1.3
738,135 + -0.1
738,174 - -0.4
738,179 + -0.1
738,204 - -0.5
738,207 + 0.3
738,215 + -0.2
738,337 + 0.8
738,473 + 16607 mRNA_8239 0.11 0.2
738,488 + 16607 mRNA_8239 0.11 -1.1
738,618 - 16607 mRNA_8239 0.17 -0.3
739,050 - 16607 mRNA_8239 0.34 -1.7
739,210 + 16607 mRNA_8239 0.41 0.3
739,229 - 16607 mRNA_8239 0.41 1.1
739,343 + 16607 mRNA_8239 0.46 -0.8
739,930 - 16607 mRNA_8239 0.70 0.7
740,086 - 16607 mRNA_8239 0.76 -1.2
740,230 + 16607 mRNA_8239 0.82 0.8
740,522 - 1.4
740,662 + -0.2
740,685 + -0.7
740,809 - -0.7
740,811 - 0.5
740,819 - -0.1
740,834 - -0.4
740,946 + 0.2
740,984 - 1.3
741,123 + -0.8
741,435 - 16608 mRNA_8240 0.12 -1.6