Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8163

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560914 to 563494 16530 mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563626 to 564400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564616 to 567626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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562,632 + 16530 mRNA_8162 0.67 0.2
562,651 + 16530 mRNA_8162 0.67 0.3
563,233 + 16530 mRNA_8162 0.90 -2.3
563,375 + 0.1
563,389 + -0.0
563,389 + -0.3
563,515 - -0.8
563,524 + -2.2
563,538 + 0.0
563,545 + 0.7
563,547 + 0.6
563,556 + 0.2
563,979 + 16531 mRNA_8163 0.46 0.3
564,106 - 16531 mRNA_8163 0.62 0.5
564,110 + 16531 mRNA_8163 0.62 0.2
564,212 - 16531 mRNA_8163 0.76 0.4
564,222 - 16531 mRNA_8163 0.77 -0.1
564,234 - 16531 mRNA_8163 0.78 -0.7
564,410 + 0.3
564,431 - -0.4
564,435 + 0.1
564,576 - -0.0
564,586 + -1.2
564,688 - 1.4
564,858 + 0.9
564,972 - 16532 mRNA_8164 0.12 -2.2
565,035 + 16532 mRNA_8164 0.14 0.9
565,147 + 16532 mRNA_8164 0.18 1.2
565,150 - 16532 mRNA_8164 0.18 -0.1
565,175 + 16532 mRNA_8164 0.19 1.2